Evidence map›Paper›PMID 21882334›Full record

ArticleChemphyschem : a European journal of chemical physics and physical chemistry2011

Long-lived states to monitor protein unfolding by proton NMR.

Aurélien Bornet, Puneet Ahuja, Riddhiman Sarkar, Laetitia Fernandes, Sonia Hadji, Shirley Y Lee, Aydin Haririnia, David Fushman, Geoffrey Bodenhausen, Paul R Vasos

Open access · greenAbstract read
In one paragraph

Article in Chemphyschem : a European journal of chemical physics and physical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Chemical science · 2023
    Article
  4. Early Divergence in Misfolding Pathways of Amyloid-Beta Peptides.Chemphyschem : a European journal of chemical physics and physical chemistry · 2021
    Article
  5. Singlet-filtered NMR spectroscopy.Science advances · 2020
    Article
  6. Article
  7. SABRE-Relay: A Versatile Route to Hyperpolarization.The journal of physical chemistry letters · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Aurélien BornetInstitut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, EPFL, Batochime, 1015 Lausanne, Switzerland.
Puneet Ahuja
Riddhiman Sarkar
Laetitia Fernandes
Sonia Hadji
Shirley Y Lee
Aydin Haririnia
David Fushman
Geoffrey Bodenhausen
Paul R Vasos
École Polytechnique Fédérale de Lausanne · CHUniversity of Maryland, College Park · USCentre National de la Recherche Scientifique · FRÉcole Normale Supérieure - PSL · FRUniversité Paris Cité · FRUniversity of Southampton · GB

Funding

Solution structure and dynamics of polyubiquitin chainsR01GM065334 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI DAVID FUSHMAN · 2002 to 2026
$6.2M
NIGMS NIH HHS GM065334NIGMS NIH HHS R01 GM065334
6 · The paper itself

Abstract

The relaxation of long-lived states (LLS) corresponds to the slow return to statistical thermal equilibrium between symmetric and antisymmetric proton spin states. This process is remarkably sensitive to the presence of external spins and can be used to obtain information about partial unfolding of proteins. We detected the appearance of a destabilized conformer of ubiquitin when urea is added to the protein in its native state. This conformer shows increased mobility in the C-terminus, which significantly extends the lifetimes of proton LLS magnetisation in Ser-65. These changes could not be detected by conventional measurements of T(1) and T(2) relaxation times of protons, and would hardly be sensed by carbon-13 or nitrogen-15 relaxation measurements. Conformers with similar dynamic and structural features, as revealed by LLS relaxation times, could be observed, in the absence of urea, in two ubiquitin mutants, L67S and L69S.

Indexed as

Protein UnfoldingHydrogen BondingHydrogen-Ion ConcentrationMolecular Dynamics SimulationMutationNuclear Magnetic Resonance, BiomolecularProtein StabilityProtonsTime FactorsUbiquitinUreaProtonsUbiquitinUrea

Identifiers

PMID21882334
PMCPMC3368952
OpenAlexW2075311269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.