Evidence map›Paper›PMID 21881558›Full record

ReviewKidney international2012

Systems biology of kidney diseases.

John Cijiang He, Peter Y Chuang, Avi Ma'ayan, Ravi Iyengar

Open access · bronzeAbstract readReview
In one paragraph

Review in Kidney international, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Review
  3. Pretransplant kidney transcriptome captures intrinsic donor organ quality and predicts 24-month outcomes.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2022
    Article
  4. Revisiting the therapeutic potential of tocotrienol.BioFactors (Oxford, England) · 2022
    Review
  5. Review
  6. Article
  7. The analysis of a time-course transcriptome profile by systems biology approaches reveals key molecular processes in acute kidney injury.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2019
    Article
  8. Review
  9. How Omics Data Can Be Used in Nephrology.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2018
    Review
  10. Article
  11. A Systems-Level View of Renal Metabolomics.Seminars in nephrology · 2018
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. The nephrologist of tomorrow: towards a kidney-omic future.Pediatric nephrology (Berlin, Germany) · 2017
    Review
  17. Review
  18. Review
  19. Integrative Biology of Diabetic Kidney Disease.Kidney diseases (Basel, Switzerland) · 2015
    Article
  20. Nephrology research--the past, present and future.Nature reviews. Nephrology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

John Cijiang HeDepartment of Medicine, Mount Sinai School of Medicine, New York, New York 10029, USA. cijiang.he@mssm.edu
Peter Y Chuang
Avi Ma'ayan
Ravi Iyengar
Icahn School of Medicine at Mount Sinai · US

Funding

System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MA'AYAN, AVI · 2007 to 2017
$22.8M
MOLECULAR MECHANISM OF DESENSITIZATIONR01GM054508 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI IYENGAR, SRINIVAS RAVI V · 1995 to 2016
$8.0M
Dynamics Underlying Tissue IntegrityR01DK087650 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HE, JOHN CIJIANG, HONE, JAMES C · 2009 to 2013
$6.7M
Role of HIPK2 in Kidney Tubulointerstitial InjuryR01DK088541 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HE, JOHN CIJIANG · 2010 to 2019
$4.0M
Cellular and molecular mechanisms of retinoids in podocytesR01DK078897 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HE, JOHN CIJIANG · 2007 to 2018
$3.6M
A Chemical Biology Network for Personalized MedicineRC2LM010994 · NLM · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARDOZO, TIMOTHY J, MA'AYAN, AVI · 2010 to 2010
$2.1M
RNA profiling of HIV-associated nephropathy in patients with the MYH9 risk alleleRC4DK090860 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI KLOTMAN, PAUL EVAN · 2010 to 2010
$1.9M
The role of SIRT1/FOXO4 pathway in podocyte apoptosis of diabetes mellitusK08DK082760 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHUANG, PETER YENLUNG · 2009 to 2013
$746k
NIDDK NIH HHS 1R01DK078897NIDDK NIH HHS 1R01DK088541NIDDK NIH HHS 1RC4DK090860NIDDK NIH HHS 5K08DK082760NIDDK NIH HHS 5R01DK087650NIDDK NIH HHS K08 DK082760NIDDK NIH HHS R01 DK078897NIDDK NIH HHS R01 DK087650NIDDK NIH HHS R01 DK088541NIDDK NIH HHS RC4 DK090860NIGMS NIH HHS 5P50GM071558NIGMS NIH HHS P50 GM071558NIGMS NIH HHS R01 GM054508NLM NIH HHS RC2 LM010994NLM NIH HHS RC2LM010994-01
6 · The paper itself

Abstract

Kidney diseases manifest in progressive loss of renal function, which ultimately leads to complete kidney failure. The mechanisms underlying the origins and progression of kidney diseases are not fully understood. Multiple factors involved in the pathogenesis of kidney diseases have made the traditional candidate gene approach of limited value toward full understanding of the molecular mechanisms of these diseases. A systems biology approach that integrates computational modeling with large-scale data gathering of the molecular changes could be useful in identifying the multiple interacting genes and their products that drive kidney diseases. Advances in biotechnology now make it possible to gather large data sets to characterize the role of the genome, epigenome, transcriptome, proteome, and metabolome in kidney diseases. When combined with computational analyses, these experimental approaches will provide a comprehensive understanding of the underlying biological processes. Multiscale analysis that connects the molecular interactions and cell biology of different kidney cells to renal physiology and pathology can be utilized to identify modules of biological and clinical importance that are perturbed in disease processes. This integration of experimental approaches and computational modeling is expected to generate new knowledge that can help to identify marker sets to guide the diagnosis, monitor disease progression, and identify new therapeutic targets.

Indexed as

Computational BiologyDrug DiscoveryEpigenomicsGene Expression ProfilingGenome-Wide Association StudyGenomicsHumansKidney DiseasesMetabolomicsMicroRNAsModels, BiologicalProteomicsQuantitative Trait LociSystems BiologyMicroRNAs

Identifiers

PMID21881558
PMCPMC3240740
OpenAlexW2071228812

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.