Evidence map›Paper›PMID 21881118›Full record

ArticleThe Journal of infectious diseases2011

Genetic variants and susceptibility to neurological complications following West Nile virus infection.

Mark Loeb, Sasha Eskandarian, Mark Rupp, Neil Fishman, Leanne Gasink, Jan Patterson, Jonathan Bramson, Thomas J Hudson, Mathieu Lemire

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Meta-analysis of genetic association studies under heterogeneity.European journal of human genetics : EJHG · 2012
    Pooled it
  3. Review
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  10. Review
  11. The Role of Nucleic Acid Sensing in Controlling Microbial and Autoimmune Disorders.International review of cell and molecular biology · 2019
    Review
  12. Article
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  15. Article
  16. Human Immunodeficiency Virus (HIV).Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2016
    Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Mark LoebDepartment of Medicine, Clinical Epidemiology, and Biostatistics, McMaster University, Hamilton, Ontario. loebm@mcmaster.ca
Sasha Eskandarian
Mark Rupp
Neil Fishman
Leanne Gasink
Jan Patterson
Jonathan Bramson
Thomas J Hudson
Mathieu Lemire
Hospital of the University of Pennsylvania · USMcMaster University · CAOntario Institute for Cancer Research · CACancer Research And Biostatistics · USThe University of Texas Health Science Center at San Antonio · USUniversity of Nebraska Medical Center · US

Funding

PHS HHS HHSN266200400066C
6 · The paper itself

Abstract

To determine genetic factors predisposing to neurological complications following West Nile virus infection, we analyzed a cohort of 560 neuroinvasive case patients and 950 control patients for 13 371 mostly nonsynonymous single-nucleotide polymorphisms (SNPs). The top 3 SNPs on the basis of statistical significance were also in genes of biological plausibility: rs2066786 in RFC1 (replication factor C1) (P = 1.88 × 10(-5); odds ratio [OR], 0.68 [95% confidence interval {CI}, .56-.81]); rs2298771 in SCN1A (sodium channel, neuronal type I α subunit) (P = 5.87 × 10(-5); OR, 1.47 [95% CI, 1.21-1.77]); and rs25651 in ANPEP (ananyl aminopeptidase) (P = 1.44 × 10(-4); OR, 0.69 [95% CI, .56-.83]). Additional genotyping of these SNPs in a separate sample of 264 case patients and 296 control patients resulted in a lack of significance in the replication cohort; joint significance was as follows: rs2066786, P = .0022; rs2298771, P = .005; rs25651, P = .042. Using mostly nonsynonymous variants, we therefore did not identify genetic variants associated with neuroinvasive disease.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single Nucleotide2',5'-Oligoadenylate SynthetaseAdultAgedAllelesCase-Control StudiesCD13 AntigensEncephalitis, ViralExonsFemaleGenotypeHumansMaleMeningitis, ViralMiddle Aged2',5'-Oligoadenylate SynthetaseCD13 AntigensNAV1.1 Voltage-Gated Sodium ChannelNerve Tissue ProteinsReceptors, CCR5Replication Protein CRFC1 protein, humanSCN1A protein, humanSodium Channels

Identifiers

PMID21881118
PMCPMC3203390
OpenAlexW2147218029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.