Evidence map›Paper›PMID 21880983›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

Epitope-specific human influenza antibody repertoires diversify by B cell intraclonal sequence divergence and interclonal convergence.

Jens C Krause, Tshidi Tsibane, Terrence M Tumpey, Chelsey J Huffman, Bryan S Briney, Scott A Smith, Christopher F Basler, James E Crowe

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 88 citations in OpenAlex.

  1. Trial
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  3. Potential antigenic explanation for atypical H1N1 infections among middle-aged adults during the 2013-2014 influenza season.Proceedings of the National Academy of Sciences of the United States of America · 2014
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  4. Review
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  9. Development of a conditional plasmid for gene deletion in non-modelApplied and environmental microbiology · 2025
    Article
  10. Retrospective SARS-CoV-2 human antibody development trajectories are largely sparse and permissive.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  16. Review
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jens C KrauseDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Tshidi Tsibane
Terrence M Tumpey
Chelsey J Huffman
Bryan S Briney
Scott A Smith
Christopher F Basler
James E Crowe
Vanderbilt University Medical Center · USIcahn School of Medicine at Mount Sinai · USCenters for Disease Control and Prevention · UG

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Kevin L Schey · 1989 to 2026
$19.6M
MOUNT SINAI INSTITUTES FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR029887 · NCRR · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SAMPSON, HUGH A · 2009 to 2011
$19.2M
1918 Influenza Virus-Neutralizing Antibodies from Individuals Born 1960-1990R21AI085306 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BASLER, CHRISTOPHER F · 2010 to 2011
$464k
NCI NIH HHS CA068485NCI NIH HHS P30 CA068485NCRR NIH HHS UL1 RR029887NCRR NIH HHS UL1RR029887NEI NIH HHS EY008126NEI NIH HHS P30 EY008126NIAID NIH HHS HHSN272200900047CNIAID NIH HHS P01 AI058113NIAID NIH HHS R21 AI085306NIAID NIH HHS R21AI085306NIDDK NIH HHS DK058404NIDDK NIH HHS P30 DK058404
6 · The paper itself

Abstract

We generated from a single blood sample five independent human mAbs that recognized the Sa antigenic site on the head of influenza hemagglutinin and exhibited inhibitory activity against a broad panel of H1N1 strains. All five Abs used the V(H)3-7 and J(H)6 gene segments, but at least four independent clones were identified by junctional analysis. High-throughput sequence analysis of circulating B cells revealed that each of the independent clones were members of complex phylogenetic lineages that had diversified widely using a pattern of progressive diversification through somatic mutation. Unexpectedly, B cells encoding multiple diverging lineages of these clones, including many containing very few mutations in the Ab genes, persisted in the circulation. Conversely, we noted frequent instances of amino acid sequence convergence in the Ag combining sites exhibited by members of independent clones, suggesting a strong selection for optimal binding sites. We suggest that maintenance in circulation of a wide diversity of somatic variants of dominant clones may facilitate recognition of drift variant virus epitopes that occur in rapidly mutating virus Ags, such as influenza hemagglutinin. In fact, these Ab clones recognize an epitope that acquired three glycosylation sites mediating escape from previously isolated human Abs.

Indexed as

Amino Acid SequenceAnimalsAntibodies, MonoclonalAntibody SpecificityAntigens, ViralB-LymphocytesCell LineageClone CellsEpitopes, B-LymphocyteFemaleGenes, ImmunoglobulinHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H1N1 SubtypeMiceMice, Inbred BALB CAntibodies, MonoclonalAntigens, ViralEpitopes, B-LymphocyteHemagglutinin Glycoproteins, Influenza Virushemagglutinin, human influenza A virus

Identifiers

PMID21880983
PMCPMC3178754
OpenAlexW2169979510

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.