Evidence map›Paper›PMID 21878537›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2011

The novel chemical entity YTR107 inhibits recruitment of nucleophosmin to sites of DNA damage, suppressing repair of DNA double-strand breaks and enhancing radiosensitization.

Konjeti R Sekhar, Yerramreddy Thirupathi Reddy, Penthala Narsimha Reddy, Peter A Crooks, Amudhan Venkateswaran, William Hayes McDonald, Ling Geng, Soumya Sasi, Robert P Van Der Waal, Joseph L Roti Roti and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Metabolic Profiling ofMolecules (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Epigenetic CRISPR Screens IdentifyCancer research · 2020
    Article
  8. Nucleophosmin in Its Interaction with Ligands.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Konjeti R SekharDepartment of Radiation Oncology, Division of Animal Care, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Yerramreddy Thirupathi Reddy
Penthala Narsimha Reddy
Peter A Crooks
Amudhan Venkateswaran
William Hayes McDonald
Ling Geng
Soumya Sasi
Robert P Van Der Waal
Joseph L Roti Roti
Kenneth J Salleng
Girish Rachakonda
Michael L Freeman
Vanderbilt University · USUniversity of Kentucky · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Understanding and Controlling p120 Dysfunction in CRCP50CA095103 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 2002 to 2017
$33.6M
Training Grant In Radiation BiologyT32CA093240 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI FREEMAN, MICHAEL L. · 2002 to 2016
$2.3M
Development of Small Molecule Radiation SensitizersR01CA140409 · NCI · VANDERBILT UNIVERSITY · PI FREEMAN, MICHAEL L., KONJETI, SEKHAR RAJA · 2010 to 2014
$1.7M
NCI NIH HHS P30 CA068485NCI NIH HHS P30 CA68485NCI NIH HHS P50 CA095103NCI NIH HHS P50CA095103NCI NIH HHS R01 CA140409NCI NIH HHS R01CA140409NCI NIH HHS T32 CA093240NCI NIH HHS T32CA093240
6 · The paper itself

Abstract

purposeRadiation therapy continues to be an important therapeutic strategy for providing definitive local/regional control of human cancer. However, oncogenes that harbor driver mutations and/or amplifications can compromise therapeutic efficacy. Thus, there is a need for novel approaches that enhance the DNA damage produced by ionizing radiation. EXPERIMENTAL

designA forward chemical genetic approach coupled with cell-based phenotypic screening of several tumor cell lines was used to identify a novel chemical entity (NCE) that functioned as a radiation sensitizer. Proteomics, comet assays, confocal microscopy, and immunoblotting were used to identify the biological target.

resultsThe screening process identified a 5-((N-benzyl-1H-indol-3-yl)-methylene)pyrimidine-2,4,6(1H,3H,5H)trione as an NCE that radiosensitized cancer cells expressing amplified and/or mutated RAS, ErbB, PIK3CA, and/or BRAF oncogenes. Affinity-based solid-phase resin capture followed by liquid chromatography/tandem mass spectrometry identified the chaperone nucleophosmin (NPM) as the NCE target. SiRNA suppression of NPM abrogated radiosensitization by the NCE. Confocal microscopy showed that the NCE inhibited NPM shuttling to radiation-induced DNA damage repair foci, and the analysis of comet assays indicated a diminished rate of DNA double-strand break repair.

conclusionThese data support the hypothesis that inhibition of DNA repair due to inhibition of NPM shuttling increases the efficacy of DNA-damaging therapeutic strategies.

Indexed as

AnimalsBarbituratesCell Line, TumorDNA Breaks, Double-StrandedDNA DamageDNA RepairHumansIndolesMiceMice, NudeMolecular ChaperonesMolecular Targeted TherapyNeoplasmsNuclear ProteinsNucleophosminRadiation-Sensitizing Agents5-((N-benzyl-1H-indol-3-yl)methylene)pyrimidine-2,4,6(1H,3H,5H)trioneBarbituratesIndolesMolecular ChaperonesNPM1 protein, humanNuclear ProteinsNucleophosminRadiation-Sensitizing Agents

Identifiers

PMID21878537
PMCPMC3195947
OpenAlexW2107778595

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.