Evidence map›Paper›PMID 21878356›Full record

ArticleBiochimica et biophysica acta2011

Involvement of DNA ligase III and ribonuclease H1 in mitochondrial DNA replication in cultured human cells.

Heini Ruhanen, Kathy Ushakov, Takehiro Yasukawa

Open access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  12. Identification and Characterization of NewFrontiers in genetics · 2019
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Mitochondrial DNA replication: a PrimPol perspective.Biochemical Society transactions · 2017
    Review
  18. Review
  19. Pathological ribonuclease H1 causes R-loop depletion and aberrant DNA segregation in mitochondria.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Heini RuhanenThe Wolfson Institute for Biomedical Research, University College London, Gower Street, London, UK.
Kathy Ushakov
Takehiro Yasukawa
University College London · GB

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Recent evidence suggests that coupled leading and lagging strand DNA synthesis operates in mammalian mitochondrial DNA (mtDNA) replication, but the factors involved in lagging strand synthesis are largely uncharacterised. We investigated the effect of knockdown of the candidate proteins in cultured human cells under conditions where mtDNA appears to replicate chiefly via coupled leading and lagging strand DNA synthesis to restore the copy number of mtDNA to normal levels after transient mtDNA depletion. DNA ligase III knockdown attenuated the recovery of mtDNA copy number and appeared to cause single strand nicks in replicating mtDNA molecules, suggesting the involvement of DNA ligase III in Okazaki fragment ligation in human mitochondria. Knockdown of ribonuclease (RNase) H1 completely prevented the mtDNA copy number restoration, and replication intermediates with increased single strand nicks were readily observed. On the other hand, knockdown of neither flap endonuclease 1 (FEN1) nor DNA2 affected mtDNA replication. These findings imply that RNase H1 is indispensable for the progression of mtDNA synthesis through removing RNA primers from Okazaki fragments. In the nucleus, Okazaki fragments are ligated by DNA ligase I, and the RNase H2 is involved in Okazaki fragment processing. This study thus proposes that the mitochondrial replication system utilises distinct proteins, DNA ligase III and RNase H1, for Okazaki fragment maturation.

Indexed as

DNA ReplicationBlotting, SouthernBlotting, WesternBone NeoplasmsDNADNA Ligase ATPDNA LigasesDNA, MitochondrialFlap EndonucleasesHumansOsteosarcomaPoly-ADP-Ribose Binding ProteinsRibonuclease HThymidine KinaseTumor Cells, CulturedXenopus ProteinsDNADNA Ligase ATPDNA ligase III alpha protein, XenopusDNA LigasesDNA, MitochondrialFlap EndonucleasesLIG3 protein, humanOkazaki fragmentsPoly-ADP-Ribose Binding ProteinsRibonuclease Hribonuclease HIThymidine Kinasethymidine kinase 1Xenopus Proteins

Identifiers

PMID21878356
PMCPMC3223524
OpenAlexW2089855332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.