ArticleBMC research notes2011
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.
Article in BMC research notes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
21 citing papers in PubMed, 34 citations in OpenAlex.
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- The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units.Frontiers in physiology · 2015Article
- Combining computational models, semantic annotations and simulation experiments in a graph database.Database : the journal of biological databases and curation · 2015Article
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- STI-GMaS: an open-source environment for simulation of sexually-transmitted infections.BMC systems biology · 2014Article
- A framework for different levels of integration of computational models into web-based virtual patients.Journal of medical Internet research · 2014Article
- HuPSON: the human physiology simulation ontology.Journal of biomedical semantics · 2013Article
- Functional tissue units and their primary tissue motifs in multi-scale physiology.Journal of biomedical semantics · 2013Article
- Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology.BMC bioinformatics · 2013Article
- Bridging the genotype-phenotype gap: what does it take?The Journal of physiology · 2013Review
- Drug and disease model resources: a consortium to create standards and tools to enhance model-based drug development.CPT: pharmacometrics & systems pharmacology · 2013Article
- Article
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Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe practice and research of medicine generates considerable quantities of data and model resources (DMRs). Although in principle biomedical resources are re-usable, in practice few can currently be shared. In particular, the clinical communities in physiology and pharmacology research, as well as medical education, (i.e. PPME communities) are facing considerable operational and technical obstacles in sharing data and models.
findingsWe outline the efforts of the PPME communities to achieve automated semantic interoperability for clinical resource documentation in collaboration with the RICORDO project. Current community practices in resource documentation and knowledge management are overviewed. Furthermore, requirements and improvements sought by the PPME communities to current documentation practices are discussed. The RICORDO plan and effort in creating a representational framework and associated open software toolkit for the automated management of PPME metadata resources is also described.
conclusionsRICORDO is providing the PPME community with tools to effect, share and reason over clinical resource annotations. This work is contributing to the semantic interoperability of DMRs through ontology-based annotation by (i) supporting more effective navigation and re-use of clinical DMRs, as well as (ii) sustaining interoperability operations based on the criterion of biological similarity. Operations facilitated by RICORDO will range from automated dataset matching to model merging and managing complex simulation workflows. In effect, RICORDO is contributing to community standards for resource sharing and interoperability.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.