Evidence map›Paper›PMID 21876185›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Reiterative Recombination for the in vivo assembly of libraries of multigene pathways.

Laura M Wingler, Virginia W Cornish

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 128 citations in OpenAlex.

  1. Evolution and synthetic biology.Current opinion in microbiology · 2023
    Review
  2. A genetic tool to express long fungal biosynthetic genes.Fungal biology and biotechnology · 2023
    Article
  3. Review
  4. Review
  5. ACS synthetic biology · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. High-throughput characterization of protein-protein interactions by reprogramming yeast mating.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. EMBO conference series: Chemical Biology 2014.Chembiochem : a European journal of chemical biology · 2014
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Laura M WinglerDepartment of Chemistry, Columbia University, 550 West 120th Street, MC 4854, New York, NY 10027, USA. lmw2114@columbia.edu
Virginia W Cornish
Columbia University · US

Funding

A Genetic Screen for Protein Evolution and ProteomicsR01GM062867 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CORNISH, VIRGINIA W · 2002 to 2010
$2.8M
NIGMS NIH HHS R01 GM062867
6 · The paper itself

Abstract

The increasing sophistication of synthetic biology is creating a demand for robust, broadly accessible methodology for constructing multigene pathways inside of the cell. Due to the difficulty of rationally designing pathways that function as desired in vivo, there is a further need to assemble libraries of pathways in parallel, in order to facilitate the combinatorial optimization of performance. While some in vitro DNA assembly methods can theoretically make libraries of pathways, these techniques are resource intensive and inherently require additional techniques to move the DNA back into cells. All previously reported in vivo assembly techniques have been low yielding, generating only tens to hundreds of constructs at a time. Here, we develop "Reiterative Recombination," a robust method for building multigene pathways directly in the yeast chromosome. Due to its use of endonuclease-induced homologous recombination in conjunction with recyclable markers, Reiterative Recombination provides a highly efficient, technically simple strategy for sequentially assembling an indefinite number of DNA constructs at a defined locus. In this work, we describe the design and construction of the first Reiterative Recombination system in Saccharomyces cerevisiae, and we show that it can be used to assemble multigene constructs. We further demonstrate that Reiterative Recombination can construct large mock libraries of at least 10(4) biosynthetic pathways. We anticipate that our system's simplicity and high efficiency will make it a broadly accessible technology for pathway construction and render it a valuable tool for optimizing pathways in vivo.

Indexed as

Gene LibraryGenetic TechniquesRecombination, GeneticBiosynthetic PathwaysCarotenoidsGenes, FungalLycopeneMultigene FamilySaccharomyces cerevisiaeCarotenoidsLycopene

Identifiers

PMID21876185
PMCPMC3174608
OpenAlexW1968602937

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.