Evidence map›Paper›PMID 21874528›Full record

ArticleFunctional & integrative genomics2012

Differential pulmonary transcriptomic profiles in murine lungs infected with low and highly virulent influenza H3N2 viruses reveal dysregulation of TREM1 signaling, cytokines, and chemokines.

Fransiskus X Ivan, Jagath C Rajapakse, Roy E Welsch, Steve G Rozen, T Narasaraju, Gordon M Xiong, Bevin P Engelward, Vincent T Chow

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In one paragraph

Article in Functional & integrative genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Fransiskus X IvanComputational and Systems Biology Program, Singapore-MIT Alliance, Singapore, Singapore.
Jagath C Rajapakse
Roy E Welsch
Steve G Rozen
T Narasaraju
Gordon M Xiong
Bevin P Engelward
Vincent T Chow
Massachusetts Institute of Technology · USNational University Health System · SGSingapore-MIT Alliance for Research and Technology · SGDuke-NUS Medical School · SGNational University of Singapore · SG

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
6 · The paper itself

Abstract

Investigating the relationships between critical influenza viral mutations contributing to increased virulence and host expression factors will shed light on the process of severe pathogenesis from the systems biology perspective. We previously generated a mouse-adapted, highly virulent influenza (HVI) virus through serial lung-to-lung passaging of a human influenza H3N2 virus strain that causes low virulent influenza (LVI) in murine lungs. This HVI virus is characterized by enhanced replication kinetics, severe lung injury, and systemic spread to major organs. Our gene microarray investigations compared the host transcriptomic responses of murine lungs to LVI virus and its HVI descendant at 12, 48, and 96 h following infection. More intense expression of genes associated with cytokine activity, type 1 interferon response, and apoptosis was evident in HVI at all time-points. We highlighted dysregulation of the TREM1 signaling pathway (an amplifier of cytokine production) that is likely to be upregulated in infiltrating neutrophils in HVI-infected lungs. The cytokine gene expression changes were corroborated by elevated levels of multiple cytokine and chemokine proteins in the bronchoalveolar lavage fluid of infected mice, especially at 12 h post-infection. Concomitantly, the downregulation of genes that mediate proliferative, developmental, and metabolic processes likely contributed to the lethality of HVI as well as lack of lung repair. Overall, our comparative transcriptomic study provided insights into key host factors that influence the dynamics, pathogenesis, and outcome of severe influenza.

Indexed as

TranscriptomeAnimalsApoptosis Regulatory ProteinsBronchoalveolar Lavage FluidChemokinesCytokinesFemaleGene Expression ProfilingGene Regulatory NetworksHost-Pathogen InteractionsInfluenza A Virus, H3N2 SubtypeLungMembrane GlycoproteinsMiceMice, Inbred BALB COrthomyxoviridae InfectionsApoptosis Regulatory ProteinsChemokinesCytokinesMembrane GlycoproteinsReceptors, ImmunologicTREM1 protein, mouseTriggering Receptor Expressed on Myeloid Cells-1

Identifiers

PMID21874528
OpenAlexW2100895156

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.