Evidence map›Paper›PMID 21874190›Full record

ReviewMolecular bioSystems2012

A comprehensive overview of computational protein disorder prediction methods.

Xin Deng, Jesse Eickholt, Jianlin Cheng

Abstract readReview
In one paragraph

Review in Molecular bioSystems, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Accurate and Fast Prediction of Intrinsic Disorder Using flDPnn.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  5. Prediction of Intrinsic Disorder Functions with DEPICTER2.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Computational prediction of disordered binding regions.Computational and structural biotechnology journal · 2023
    Review
  11. Article
  12. Review
  13. Deep learning in prediction of intrinsic disorder in proteins.Computational and structural biotechnology journal · 2022
    Review
  14. Caseinolytic Proteins (Clp) in the GenusMolecules (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Understanding the penetrance of intrinsic protein disorder in rotavirus proteome.International journal of biological macromolecules · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Xin DengDepartment of Computer Science, University of Missouri, Columbia, MO 65211, USA.
Jesse Eickholt
Jianlin Cheng

Funding

Integrated Prediction of Protein Struture at 1D, 2D and 3D LevelsR01GM093123 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI CHENG, JIANLIN · 2010 to 2023
$3.8M
NIGMS NIH HHS 1R01GM093123NIGMS NIH HHS R01 GM093123
6 · The paper itself

Abstract

Over the past decade there has been a growing acknowledgement that a large proportion of proteins within most proteomes contain disordered regions. Disordered regions are segments of the protein chain which do not adopt a stable structure. Recognition of disordered regions in a protein is of great importance for protein structure prediction, protein structure determination and function annotation as these regions have a close relationship with protein expression and functionality. As a result, a great many protein disorder prediction methods have been developed so far. Here, we present an overview of current protein disorder prediction methods including an analysis of their advantages and shortcomings. In order to help users to select alternative tools under different circumstances, we also evaluate 23 disorder predictors on the benchmark data of the most recent round of the Critical Assessment of protein Structure Prediction (CASP) and assess their accuracy using several complementary measures.

Indexed as

Protein FoldingAmino Acid SequenceComputational BiologyDatabases, ProteinHumansModels, MolecularMolecular Sequence DataProteinsROC CurveProteins

Identifiers

PMID21874190
PMCPMC3633217

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.