Evidence map›Paper›PMID 21874001›Full record

ArticleNature genetics2011

Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.

Jaspal S Kooner, Danish Saleheen, Xueling Sim, Joban Sehmi, Weihua Zhang, Philippe Frossard, Latonya F Been, Kee-Seng Chia, Antigone S Dimas, Neelam Hassanali and 59 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 310 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
310citing papers in PubMed, 11 pooled it
33.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

310 citing papers in PubMed, 11 syntheses or guidelines pooled it, 545 citations in OpenAlex.

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  20. Aging-related CD8PeerJ · 2026
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250 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

69 authors at 20 institutions in 11 countries.

Jaspal S KoonerNational Heart and Lung Institute (NHLI), Imperial College London, Hammersmith Hospital, London, UK. j.kooner@imperial.ac.uk
Danish Saleheen
Xueling Sim
Joban Sehmi
Weihua Zhang
Philippe Frossard
Latonya F Been
Kee-Seng Chia
Antigone S Dimas
Neelam Hassanali
Tazeen Jafar
Jeremy B M Jowett
Xinzhong Li
Venkatesan Radha
Simon D Rees
Fumihiko Takeuchi
Robin Young
Tin Aung
Abdul Basit
Manickam Chidambaram
Debashish Das
Elin Grundberg
Asa K Hedman
Zafar I Hydrie
Muhammed Islam
Chiea-Chuen Khor
Sudhir Kowlessur
Malene M Kristensen
Samuel Liju
Wei-Yen Lim
David R Matthews
Jianjun Liu
Andrew P Morris
Alexandra C Nica
Janani M Pinidiyapathirage
Inga Prokopenko
Asif Rasheed
Maria Samuel
Nabi Shah
A Samad Shera
Kerrin S Small
Chen Suo
Ananda R Wickremasinghe
Tien Yin Wong
Mingyu Yang
Fan Zhang
DIAGRAM
MuTHER
Goncalo R Abecasis
Anthony H Barnett
Mark Caulfield
Panos Deloukas
Timothy M Frayling
Philippe Froguel
Norihiro Kato
Prasad Katulanda
M Ann Kelly
Junbin Liang
Viswanathan Mohan
Dharambir K Sanghera
James Scott
Mark Seielstad
Paul Z Zimmet
Paul Elliott
Yik Ying Teo
Mark I McCarthy
John Danesh
E Shyong Tai
John C Chambers
National University of Singapore · SGBGI Group (China) · CNHammersmith Hospital · GBAgency for Science, Technology and Research · SGBaker Heart and Diabetes Institute · AUCentre for Human Genetics · GBNational Health Service · GBUniversity of Cambridge · GBUniversity of Geneva · CHAga Khan University · PKChurchill Hospital · GBHeart of England NHS Foundation Trust · GBKing's College London · GBCenter for Non-Communicable Diseases · PKIndian Council of Medical Research · INQueen Mary University of London · GBUniversity of California, San Francisco · USUniversity of Kelaniya · LKImperial College London · GBUniversity of Exeter · GB

Funding

Genome-wide Association Scan to Identify Risk Genes for Type 2 Diabetes in AsianR01DK082766 · NIDDK · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI SANGHERA, DHARAMBIR K. · 2009 to 2011
$2.3M
Indo-US Collaboration in Genomic Studies on DiabetesK01TW006087 · FIC · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SANGHERA, DHARAMBIR K · 2002 to 2007
$778k
DIABETES IN PACIFIC - GENETIC ENVIRONMENTAL INTERACTIONSR01DK025446 · NIDDK · INTERNATIONAL DIABETES INSTITUTE · PI ZIMMET, PAUL Z · 1986 to 1999
–
British Heart Foundation RG/08/014/24067British Heart Foundation SP/04/002Department of Health RP-PG-0407-10371FIC NIH HHS K01 TW006087FIC NIH HHS KO1TW006087Medical Research Council G0601966Medical Research Council G0700931Medical Research Council G0801056NIDDK NIH HHS DK-25446NIDDK NIH HHS R01 DK082766NIDDK NIH HHS R01DK082766Wellcome Trust 070854/Z/03/ZWellcome Trust 079643Wellcome Trust 080747/Z/06/ZWellcome Trust 083270/Z/07/ZWellcome Trust 084723/Z/08/ZWellcome Trust 090532
6 · The paper itself

Abstract

We carried out a genome-wide association study of type-2 diabetes (T2D) in individuals of South Asian ancestry. Our discovery set included 5,561 individuals with T2D (cases) and 14,458 controls drawn from studies in London, Pakistan and Singapore. We identified 20 independent SNPs associated with T2D at P < 10(-4) for testing in a replication sample of 13,170 cases and 25,398 controls, also all of South Asian ancestry. In the combined analysis, we identified common genetic variants at six loci (GRB14, ST6GAL1, VPS26A, HMG20A, AP3S2 and HNF4A) newly associated with T2D (P = 4.1 × 10(-8) to P = 1.9 × 10(-11)). SNPs at GRB14 were also associated with insulin sensitivity (P = 5.0 × 10(-4)), and SNPs at ST6GAL1 and HNF4A were also associated with pancreatic beta-cell function (P = 0.02 and P = 0.001, respectively). Our findings provide additional insight into mechanisms underlying T2D and show the potential for new discovery from genetic association studies in South Asians, a population with increased susceptibility to T2D.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyQuantitative Trait LociAsian PeopleCase-Control StudiesDiabetes Mellitus, Type 2FemaleGene Expression RegulationGenetics, PopulationGenome, HumanHumansLinkage DisequilibriumLondonMalePakistanPolymorphism, Single Nucleotide

Identifiers

PMID21874001
PMCPMC3773920
OpenAlexW1989970381

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.