Evidence map›Paper›PMID 21873998›Full record

ArticleNature genetics2011

The genome of the mesopolyploid crop species Brassica rapa.

Xiaowu Wang, Hanzhong Wang, Jun Wang, Rifei Sun, Jian Wu, Shengyi Liu, Yinqi Bai, Jeong-Hwan Mun, Ian Bancroft, Feng Cheng and 101 more

Open access · greenAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,128 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,128citing papers in PubMed, 1 pooled it
182.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,128 citing papers in PubMed, 1 synthesis or guideline pooled it, 2,187 citations in OpenAlex.

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1,068 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

111 authors at 20 institutions in 12 countries.

Xiaowu WangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.
Hanzhong Wang
Jun Wang
Rifei Sun
Jian Wu
Shengyi Liu
Yinqi Bai
Jeong-Hwan Mun
Ian Bancroft
Feng Cheng
Sanwen Huang
Xixiang Li
Wei Hua
Junyi Wang
Xiyin Wang
Michael Freeling
J Chris Pires
Andrew H Paterson
Boulos Chalhoub
Bo Wang
Alice Hayward
Andrew G Sharpe
Beom-Seok Park
Bernd Weisshaar
Binghang Liu
Bo Li
Bo Liu
Chaobo Tong
Chi Song
Christopher Duran
Chunfang Peng
Chunyu Geng
Chushin Koh
Chuyu Lin
David Edwards
Desheng Mu
Di Shen
Eleni Soumpourou
Fei Li
Fiona Fraser
Gavin Conant
Gilles Lassalle
Graham J King
Guusje Bonnema
Haibao Tang
Haiping Wang
Harry Belcram
Heling Zhou
Hideki Hirakawa
Hiroshi Abe
Hui Guo
Hui Wang
Huizhe Jin
Isobel A P Parkin
Jacqueline Batley
Jeong-Sun Kim
Jérémy Just
Jianwen Li
Jiaohui Xu
Jie Deng
Jin A Kim
Jingping Li
Jingyin Yu
Jinling Meng
Jinpeng Wang
Jiumeng Min
Julie Poulain
Jun Wang
Katsunori Hatakeyama
Kui Wu
Li Wang
Lu Fang
Martin Trick
Matthew G Links
Meixia Zhao
Mina Jin
Nirala Ramchiary
Nizar Drou
Paul J Berkman
Qingle Cai
Quanfei Huang
Ruiqiang Li
Satoshi Tabata
Shifeng Cheng
Shu Zhang
Shujiang Zhang
Shunmou Huang
Shusei Sato
Silong Sun
Soo-Jin Kwon
Su-Ryun Choi
Tae-Ho Lee
Wei Fan
Xiang Zhao
Xu Tan
Xun Xu
Yan Wang
Yang Qiu
Ye Yin
Yingrui Li
Yongchen Du
Yongcui Liao
Yongpyo Lim
Yoshihiro Narusaka
Yupeng Wang
Zhenyi Wang
Zhenyu Li
Zhiwen Wang
Zhiyong Xiong
Zhonghua Zhang
Brassica rapa Genome Sequencing Project Consortium
BGI Group (China) · CNChinese Academy of Agricultural Sciences · CNInstitute of Vegetables and Flowers · CNNorth China University of Science and Technology · CNOil Crops Research Institute · CNUniversity of Georgia · USChungnam National University · KRJohn Innes Centre · GBKazusa DNA Research Institute · JPNational Academy of Agricultural Science · KRRural Development Administration · KRUniversité d'Évry Val-d'Essonne · FRUniversity of Missouri · USUniversity of Queensland · AUAgriculture and Agri-Food Canada · CANorwich Research Park · GBPlant Biotechnology Institute · CARothamsted Research · GBUniversity of California, Berkeley · USAgriculture and Food · AU

Funding

Biotechnology and Biological Sciences Research Council BB/E017363/1
6 · The paper itself

Abstract

We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one of the three copies consistently retaining a disproportionately large fraction of the genes expected to have been present in its ancestor. Variation in the number of members of gene families present in the genome may contribute to the remarkable morphological plasticity of Brassica species. The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops.

Indexed as

Genome, PlantPolyploidyArabidopsisBrassica rapaChromosomes, Artificial, BacterialChromosomes, PlantContig MappingEvolution, MolecularGene DuplicationGenes, PlantMolecular Sequence AnnotationMolecular Sequence DataPhylogenySequence Analysis, DNA

Identifiers

PMID21873998
OpenAlexW2141550398

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.