Evidence map›Paper›PMID 21873665›Full record

ArticleInvestigative ophthalmology & visual science2011

PITX2 is involved in stress response in cultured human trabecular meshwork cells through regulation of SLC13A3.

M Hermina Strungaru, Tim Footz, Yi Liu, Fred B Berry, Pascal Belleau, Elena V Semina, Vincent Raymond, Michael A Walter

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Elevated TGFβ signaling contributes to ocular anterior segment dysgenesis in Col4a1 mutant mice.Matrix biology : journal of the International Society for Matrix Biology · 2022
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  8. Ocular genetics in the genomics age.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Review
  9. Article
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  12. Article
  13. Sodium-coupled dicarboxylate and citrate transporters from the SLC13 family.Pflugers Archiv : European journal of physiology · 2014
    Review
  14. Article
  15. Article
  16. The Role of INDY in Metabolic Regulation.Computational and structural biotechnology journal · 2013
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

M Hermina StrungaruDepartment of Medical Genetics, University of Alberta, Edmonton, Alberta, Canada.
Tim Footz
Yi Liu
Fred B Berry
Pascal Belleau
Elena V Semina
Vincent Raymond
Michael A Walter
Medical Genetics Center · DEMedical College of Wisconsin · USUniversité Laval · CAUniversity of Alberta · CA

Funding

Molecular Mechanisms of Axenfeld-Rieger SyndromeR01EY015518 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI Elena V Semina · 2005 to 2026
$5.6M
CIHRNEI NIH HHS EY015518NEI NIH HHS R01 EY015518
6 · The paper itself

Abstract

purposeMutations of the PITX2 gene cause Axenfeld-Rieger syndrome (ARS) and glaucoma. In this study, the authors investigated genes directly regulated by the PITX2 transcription factor to gain insight into the mechanisms underlying these disorders.

methodsRNA from nonpigmented ciliary epithelium cells transfected with hormone-inducible PITX2 and activated by mifepristone was subjected to microarray analyses. Data were analyzed using dCHIP algorithms to detect significant differences in expression. Genes with significantly altered expression in multiple microarray experiments in the presence of activated PITX2 were subjected to in silico and biochemical analyses to validate them as direct regulatory targets. One target gene was further characterized by studying the effect of its knockdown in a cell model of oxidative stress, and its expression in zebrafish embryos was analyzed by in situ hybridization.

resultsSolute carrier family 13 sodium-dependent dicarboxylate transporter member 3 (SLC13A3) was identified as 1 of 47 potential PITX2 target genes in ocular cells. PITX2 directly regulates SLC13A3 expression, as demonstrated by luciferase reporter and chromatin immunoprecipitation assays. Reduction of PITX2 or SLC13A3 levels by small interfering RNA (siRNA)-mediated knockdown augmented the death of transformed human trabecular meshwork cells exposed to hydrogen peroxide. Zebrafish slc13a3 is expressed in anterior ocular regions in a pattern similar to that of pitx2.

conclusionsThe results indicate that SLC13A3 is a direct downstream target of PITX2 transcriptional regulation and that levels of PITX2 and SLC13A3 modulate responses to oxidative stress in ocular cells.

Indexed as

AnimalsCells, CulturedCell SurvivalGene Expression RegulationHomeobox Protein PITX2Homeodomain ProteinsHumansHydrogen PeroxideIn Situ HybridizationOligonucleotide Array Sequence AnalysisOrganic Anion Transporters, Sodium-DependentOxidative StressPlasmidsReverse Transcriptase Polymerase Chain ReactionRNA, Small InterferingSymportersHomeobox Protein PITX2Homeodomain ProteinsHydrogen PeroxideOrganic Anion Transporters, Sodium-DependentRNA, Small InterferingSLC13A3 protein, humanSymportersTranscription Factors

Identifiers

PMID21873665
PMCPMC3183983
OpenAlexW2014807552

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.