ArticleApplied and environmental microbiology2011
Merging taxonomy with ecological population prediction in a case study of Vibrionaceae.
Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Genomic basis of environmental adaptation in the widespread poly-extremophilic Exiguobacterium group.The ISME journal · 2024Article
- Bacterial alginate metabolism: an important pathway for bioconversion of brown algae.Biotechnology for biofuels · 2021Review
- How can microbial population genomics inform community ecology?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020Review
- Ancestral gene acquisition as the key to virulence potential in environmental Vibrio populations.The ISME journal · 2018Article
- Evolution of a Vegetarian Vibrio: Metabolic Specialization of Vibrio breoganii to Macroalgal Substrates.Journal of bacteriology · 2018Article
- Article
- Environmental Pseudomonads Inhibit Cystic Fibrosis Patient-Derived Pseudomonas aeruginosa.Applied and environmental microbiology · 2017Article
- Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves.PloS one · 2017Article
- The contribution of marine aggregate-associated bacteria to the accumulation of pathogenic bacteria in oysters: an agent-based model.Ecology and evolution · 2016Article
- Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes.Nature communications · 2016Article
- In Silico Gene-Level Evolution Explains Microbial Population Diversity through Differential Gene Mobility.Genome biology and evolution · 2015Article
- Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters.The ISME journal · 2015Article
- Article
- A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors.World journal of microbiology & biotechnology · 2015Article
- Vibrio trends in the ecology of the Venice lagoon.Applied and environmental microbiology · 2014Article
- New Vibrio species associated to molluscan microbiota: a review.Frontiers in microbiology · 2014Review
- Oligotyping reveals community level habitat selection within the genus Vibrio.Frontiers in microbiology · 2014Article
- How community ecology can improve our understanding of cholera dynamics.Frontiers in microbiology · 2014Article
- Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level.Frontiers in microbiology · 2014Review
- Microbial genomic taxonomy.BMC genomics · 2013Article
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Authors and funding
3 authors.
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Abstract
We synthesized population structure data from three studies that assessed the fine-scale distribution of Vibrionaceae among temporally and spatially distinct environmental categories in coastal seawater and animals. All studies used a dynamic model (AdaptML) to identify phylogenetically cohesive and ecologically distinct bacterial populations and their predicted habitats without relying on a predefined genetic cutoff or relationships to previously named species. Across the three studies, populations were highly overlapping, displaying similar phylogenetic characteristics (identity and diversity), and were predominantly congruent with taxonomic Vibrio species previously characterized as genotypic clusters by multilocus sequence analysis (MLSA). The environmental fidelity of these populations appears high, with 9 out of 12 reproducibly associating with the same predicted (micro)habitats when similar environmental categories were sampled. Overall, this meta-analysis provides information on the habitat predictability and structure of previously described species, demonstrating that MLSA-based taxonomy can, at least in some cases, serve to approximate ecologically cohesive populations.
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