Evidence map›Paper›PMID 21873207›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Multilevel autoregulation of λ repressor protein CI by DNA looping in vitro.

Dale Lewis, Phuoc Le, Chiara Zurla, Laura Finzi, Sankar Adhya

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Microorganisms · 2023
    Article
  9. Control of λ LysogenicACS synthetic biology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Expanding the toolbox forSynthetic biology (Oxford, England) · 2018
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Dale LewisLaboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-4264, USA.
Phuoc Le
Chiara Zurla
Laura Finzi
Sankar Adhya
National Cancer Institute · USEmory University · USGeorgia Institute of Technology · USNational Institutes of Health · US

Funding

Regulation of Gene TranscriptionZIABC008751 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ADHYA, SANKAR · 2009 to 2025
$24.3M
The lambda bacteriophage regulatory loopR01GM084070 · NIGMS · EMORY UNIVERSITY · PI FINZI, LAURA · 2009 to 2021
$4.1M
Intramural NIH HHSNIGMS NIH HHS R01 GM084070PHS HHS RGM084070A
6 · The paper itself

Abstract

The prophage state of bacteriophage λ is extremely stable and is maintained by a highly regulated level of λ repressor protein, CI, which represses lytic functions. CI regulates its own synthesis in a lysogen by activating and repressing its promoter, P(RM). CI participates in long-range interactions involving two regions of widely separated operator sites by generating a loop in the intervening DNA. We investigated the roles of each individual site under conditions that permitted DNA loop formation by using in vitro transcription assays for the first time on supercoiled DNA that mimics in vivo situation. We confirmed that DNA loops generated by oligomerization of CI bound to its operators influence the autoactivation and autorepression of P(RM) regulation. We additionally report that different configurations of DNA loops are central to this regulation--one configuration further enhances autoactivation and another is essential for autorepression of P(RM).

Indexed as

Bacteriophage lambdaDNA, SuperhelicalDNA, ViralLysogenyRepressor ProteinsViral ProteinsDNA, SuperhelicalDNA, ViralRepressor ProteinsViral Proteins

Identifiers

PMID21873207
PMCPMC3169136
OpenAlexW2051132214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.