Evidence map›Paper›PMID 21870819›Full record

ArticleBiochemistry2011

Structural basis of the substrate specificity of bifunctional isocitrate dehydrogenase kinase/phosphatase.

Susan P Yates, Thomas E Edwards, Cassie M Bryan, Adam J Stein, Wesley C Van Voorhis, Peter J Myler, Lance J Stewart, Jimin Zheng, Zongchao Jia

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Study on the phosphorylation of NADJournal of enzyme inhibition and medicinal chemistry · 2025
    Article
  2. Review
  3. Engineering the glyoxylate cycle for chemical bioproduction.Frontiers in bioengineering and biotechnology · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Design principles underpinning the regulatory diversity of protein kinases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Review
  8. Structural and mechanistic insights into the bifunctional enzyme isocitrate dehydrogenase kinase/phosphatase AceK.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Susan P YatesDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON K7L 3N6, Canada.
Thomas E Edwards
Cassie M Bryan
Adam J Stein
Wesley C Van Voorhis
Peter J Myler
Lance J Stewart
Jimin Zheng
Zongchao Jia
Center for Infectious Disease Research · USQueen's University · CABeijing Normal University · CNUniversity of Washington · US

Funding

CIHRNIAID NIH HHS HHSN272200700057C
6 · The paper itself

Abstract

Isocitrate dehydrogenase kinase/phosphatase (AceK) regulates entry into the glyoxylate bypass by reversibly phosphorylating isocitrate dehydrogenase (ICDH). On the basis of the recently determined structure of the AceK-ICDH complex from Escherichia coli, we have classified the structures of homodimeric NADP(+)-ICDHs to rationalize and predict which organisms likely contain substrates for AceK. One example is Burkholderia pseudomallei (Bp). Here we report a crystal structure of Bp-ICDH that exhibits the necessary structural elements required for AceK recognition. Kinetic analyses provided further confirmation that Bp-ICDH is a substrate for AceK. We conclude that the highly stringent AceK binding sites on ICDH are maintained only in Gram-negative bacteria.

Indexed as

Burkholderia pseudomalleiCatalytic DomainDimerizationEscherichia coliEscherichia coli ProteinsGram-Negative BacteriaIsocitrate DehydrogenaseKineticsModels, MolecularMultienzyme ComplexesProtein ConformationProtein Interaction Domains and MotifsProtein Structure, QuaternarySubstrate SpecificityAceK protein, E coliEscherichia coli ProteinsIsocitrate DehydrogenaseMultienzyme Complexes

Identifiers

PMID21870819
PMCPMC3354702
OpenAlexW1982453785

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.