Evidence map›Paper›PMID 21868050›Full record

ArticleVirology2011

Differential virus restriction patterns of rhesus macaque and human APOBEC3A: implications for lentivirus evolution.

Kimberly Schmitt, Kejun Guo, Malinda Algaier, Autumn Ruiz, Fang Cheng, Jianming Qiu, Silke Wissing, Mario L Santiago, Edward B Stephens

Abstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kimberly SchmittDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS 66160, USA.
Kejun Guo
Malinda Algaier
Autumn Ruiz
Fang Cheng
Jianming Qiu
Silke Wissing
Mario L Santiago
Edward B Stephens
University of Kansas Medical Center · USUniversity of Colorado Denver · USGladstone Institutes · US

Funding

THE ROLE OF VPU IN HIV-1 PATHOGENESISR01AI051981 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI STEPHENS, EDWARD BRICE · 2002 to 2011
$3.1M
Innate Restriction Factor Modulation of Retrovirus-specific Humoral ImmunityR01AI090795 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS · 2010 to 2013
$2.8M
NIAID NIH HHS AI090795NIAID NIH HHS AI51981NIAID NIH HHS R01 AI051981NIAID NIH HHS R01 AI090795
6 · The paper itself

Abstract

The human apolipoprotein B mRNA editing enzyme catalytic peptide-like 3 (APOBEC3; A3) family of proteins (A3A-H) are known to restrict various retroviruses and retroelements, but the full complement of rhesus macaque A3 proteins remains unclear. We report the isolation and characterization of the hA3A homologue from rhesus macaques (rhA3A) and show that the rhesus macaque and human A3 genes are orthologous. RhA3A is expressed at high levels in activated CD4+ T cells, is widely expressed in macaque tissues, and is degraded in the presence of the human immunodeficiency virus (HIV-1) and simian-human immunodeficiency virus (SHIV) genomes. Our results indicate that rhA3A is a potent inhibitor of SHIVΔvif and to a lesser extent HIV-1Δvif. Unlike hA3A, rhA3A did not inhibit adeno-associated virus 2 (AAV-2) replication and L1 retrotransposition. These data suggest an evolutionary switch in primate A3A virus specificity and provide the first evidence that a primate A3A can inhibit lentivirus replication.

Indexed as

Evolution, MolecularAnimalsAPOBEC-1 DeaminaseCD4-Positive T-LymphocytesCytidine DeaminaseDependovirusGene Expression ProfilingHIVHumansMacaca mulattaMolecular Sequence DataRetroelementsSequence Analysis, DNASequence Homology, Amino AcidSimian Immunodeficiency VirusAPOBEC-1 DeaminaseAPOBEC1 protein, humanCytidine DeaminaseRetroelements

Identifiers

PMID21868050
PMCPMC4104698
OpenAlexW2048538015

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.