Evidence map›Paper›PMID 21866962›Full record

ArticleJournal of medicinal chemistry2011

Novel peptide-specific quantitative structure-activity relationship (QSAR) analysis applied to collagen IV peptides with antiangiogenic activity.

Corban G Rivera, Elena V Rosca, Niranjan B Pandey, Jacob E Koskimaki, Joel S Bader, Aleksander S Popel

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Computer-aided design of amino acid-based therapeutics: a review.Drug design, development and therapy · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Corban G RiveraDepartment of Biomedical Engineering, 613 Traylor Building, Johns Hopkins University, 720 Rutland Avenue, Baltimore, Maryland 21205, United States. cgrivera@jhu.edu
Elena V Rosca
Niranjan B Pandey
Jacob E Koskimaki
Joel S Bader
Aleksander S Popel
Johns Hopkins University · USHigh Throughput Biology (United States) · US

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
Systems Biology of Angiogenesis in Peripheral Arterial DiseaseR01HL101200 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI POPEL, ALEKSANDER S. · 2010 to 2022
$10.7M
Predictive experiment-based multiscale models of the tumor immune microenvironment and immunotherapy in breast cancerR01CA138264 · NCI · JOHNS HOPKINS UNIVERSITY · PI POPEL, ALEKSANDER S. · 2009 to 2023
$8.1M
Networks, Pathways and Dynamics of Lysine ModificationU54GM103520 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BADER, JOEL S. · 2012 to 2013
$7.0M
Nanoparticle-mediated peptide delivery for breast cancerR21CA152473 · NCI · JOHNS HOPKINS UNIVERSITY · PI GREEN, JORDAN · 2011 to 2012
$392k
NCI NIH HHS R01 CA138264NCI NIH HHS R21 CA152473NCRR NIH HHS U54 RR020839NCRR NIH HHS U54RR020839NHLBI NIH HHS R01 HL101200NIGMS NIH HHS U54 GM103520
6 · The paper itself

Abstract

Angiogenesis is the growth of new blood vessels from existing vasculature. Excessive vascularization is associated with a number of diseases including cancer. Antiangiogenic therapies have the potential to stunt cancer progression. Peptides derived from type IV collagen are potent inhibitors of angiogenesis. We wanted to gain a better understanding of collagen IV structure-activity relationships using a ligand-based approach. We developed novel peptide-specific QSAR models to study the activity of the peptides in endothelial cell proliferation, migration, and adhesion inhibition assays. We found that the models produced quantitatively accurate predictions of activity and provided insight into collagen IV derived peptide structure-activity relationships.

Indexed as

Quantitative Structure-Activity RelationshipAlgorithmsAngiogenesis InhibitorsCell AdhesionCell MovementCell ProliferationCollagen Type IVEndothelial CellsHumansHuman Umbilical Vein Endothelial CellsLigandsModels, MolecularNeovascularization, PhysiologicPeptidesAngiogenesis InhibitorsCollagen Type IVLigandsPeptides

Identifiers

PMID21866962
PMCPMC3195544
OpenAlexW2415324896

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.