Evidence map›Paper›PMID 21866942›Full record

ArticleACS chemical biology2011

A chemical genomic analysis of decoquinate, a Plasmodium falciparum cytochrome b inhibitor.

Tae-Gyu Nam, Case W McNamara, Selina Bopp, Neekesh V Dharia, Stephan Meister, Ghislain M C Bonamy, David M Plouffe, Nobutaka Kato, Susan McCormack, Badry Bursulaya and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
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  4. Article
  5. Comparative chemical genomics inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. 7-ACS infectious diseases · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. MalDA, Accelerating Malaria Drug Discovery.Trends in parasitology · 2021
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. The QACS infectious diseases · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Tae-Gyu NamDepartment of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States.
Case W McNamara
Selina Bopp
Neekesh V Dharia
Stephan Meister
Ghislain M C Bonamy
David M Plouffe
Nobutaka Kato
Susan McCormack
Badry Bursulaya
Hangjun Ke
Akhil B Vaidya
Peter G Schultz
Elizabeth A Winzeler
Genomics Institute of the Novartis Research Foundation · USDrexel University · USScripps Research Institute · US

Funding

ORGANELLE GENOMES OF MALARIAL PARASITESR01AI028398 · NIAID · MCP HAHNEMANN UNIVERSITY · PI AKHIL B VAIDYA · 1989 to 2026
$10.1M
Discovery of chemically validated malaria liver stage targetsR01AI090141 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2011 to 2019
$3.4M
Experimental Annotation of the P. Falciparum GenomeR01AI059472 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WINZELER, ELIZABETH A · 2005 to 2009
$2.2M
Investigating the molecular basis of primaquine resistanceR56AI091832 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES III, JOHN R · 2011 to 2011
$474k
NIAID NIH HHS R01 AI028398NIAID NIH HHS R01AI028398NIAID NIH HHS R01 AI059472NIAID NIH HHS R01 AI090141NIAID NIH HHS R01AI090141NIAID NIH HHS R56 AI091832Wellcome TrustWellcome Trust WT078285
6 · The paper itself

Abstract

Decoquinate has single-digit nanomolar activity against in vitro blood stage Plasmodium falciparum parasites, the causative agent of human malaria. In vitro evolution of decoquinate-resistant parasites and subsequent comparative genomic analysis to the drug-sensitive parental strain revealed resistance was conferred by two nonsynonymous single nucleotide polymorphisms in the gene encoding cytochrome b. The resultant amino acid mutations, A122T and Y126C, reside within helix C in the ubiquinol-binding pocket of cytochrome b, an essential subunit of the cytochrome bc(1) complex. As with other cytochrome bc(1) inhibitors, such as atovaquone, decoquinate has low nanomolar activity against in vitro liver stage P. yoelii and provides partial prophylaxis protection when administered to infected mice at 50 mg kg(-1). In addition, transgenic parasites expressing yeast dihydroorotate dehydrogenase are >200-fold less sensitive to decoquinate, which provides additional evidence that this drug inhibits the parasite's mitochondrial electron transport chain. Importantly, decoquinate exhibits limited cross-resistance to a panel of atovaquone-resistant parasites evolved to harbor various mutations in cytochrome b. The basis for this difference was revealed by molecular docking studies, in which both of these inhibitors were shown to have distinctly different modes of binding within the ubiquinol-binding site of cytochrome b.

Indexed as

AnimalsAntimalarialsCrystallography, X-RayCytochromes bDecoquinateDrug DiscoveryDrug Resistance, FungalFemaleHumansMiceMice, Inbred ICRModels, MolecularMolecular StructureParasitic Sensitivity TestsPlasmodium falciparumStructure-Activity RelationshipAntimalarialsCytochromes bDecoquinate

Identifiers

PMID21866942
PMCPMC3220786
OpenAlexW2080430126

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.