Evidence map›Paper›PMID 21866906›Full record

ArticleBiochemistry2011

Oligomeric state of the oxalate transporter, OxlT.

Di-Cody Kang, Prahnesh A Venkataraman, Mark E Dumont, Peter C Maloney

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Di-Cody KangDepartment of Physiology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States.
Prahnesh A Venkataraman
Mark E Dumont
Peter C Maloney
University of Rochester Medical Center · USJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

Multi-Level Optimization of Membrane Proteins for CrystallographyU54GM094611 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI DUMONT, MARK E. · 2010 to 2014
$6.3M
ION GRADIENTS AND ENERGY COUPLING IN BACTERIAR01GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 1985 to 2012
$4.5M
ION TRANSPORT MECHANISMS IN BLOOD CELLSR01DK027495 · NIDDK · UNIVERSITY OF ROCHESTER · PI DUMONT, MARK E. · 1986 to 2007
$2.0M
Ion Gradients and Energy Coupling in BacteriaR56GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 2007 to 2007
$515k
NIDDK NIH HHS DK27495NIDDK NIH HHS R01 DK027495NIGMS NIH HHS GM24195NIGMS NIH HHS GM94611NIGMS NIH HHS R01 GM024195NIGMS NIH HHS R56 GM024195NIGMS NIH HHS U54 GM094611
6 · The paper itself

Abstract

OxlT, the oxalate transporter of Oxalobacter formigenes, was studied to determine its oligomeric state in solution and in the membrane. Three independent approaches were used. First, we used triple-detector (SEC-LS) size exclusion chromatography to analyze purified OxlT in detergent/lipid micelles. These measurements evaluate protein mass in a manner independent of contributions from detergent and lipid; such work shows an average OxlT mass near 47 kDa for detergent-solubilized material, consistent with that expected for monomeric OxlT (46 kDa). A disulfide-linked OxlT mutant was used to verify that it was possible detect dimers under these conditions. A second approach used amino-reactive cross-linkers of varying spacer lengths to study OxlT in detergent/lipid micelles and in natural or artificial membranes, followed by analysis via sodium dodecyl sulfate-polyacrylamide gel electrophoresis. These tests, performed under conditions where the presence of dimers can be documented for either of two known dimeric transporters (AdiC or TetL), indicate that OxlT exists as a monomer in the membrane and retains this status upon detergent solubilization. In a final test, we showed that reconstitution of OxlT into lipid vesicles at variable protein/lipid ratios has no effect on the specific activity of subsequent oxalate transport, as the OxlT content varies between 0.027 and 5.4 OxlT monomers/proteoliposome. We conclude that OxlT is a functional monomer in the membrane and in detergent/lipid micelles.

Indexed as

Amino Acid SubstitutionBacterial ProteinsChromatography, GelCysteineDetergentsMembrane Transport ProteinsMolecular WeightOxalobacter formigenesProtein MultimerizationBacterial ProteinsCysteineDetergentsMembrane Transport ProteinsOxlT protein, bacteria

Identifiers

PMID21866906
PMCPMC3183149
OpenAlexW1988464444

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.