Evidence map›Paper›PMID 21866115›Full record

ArticleGenes and immunity2012

The rs5743836 polymorphism in TLR9 confers a population-based increased risk of non-Hodgkin lymphoma.

A Carvalho, C Cunha, A J Almeida, N S Osório, M Saraiva, M Teixeira-Coelho, S Pedreiro, E Torrado, N Domingues, A G Gomes-Alves and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.

  1. Pooled it
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  10. B Cell Lymphoma Immunotherapy Using TLR9-Targeted Oligonucleotide STAT3 Inhibitors.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  11. Association betweenOncoTargets and therapy · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 9 institutions in 4 countries.

A CarvalhoLife and Health Sciences Research Institute, School of Health Sciences, University of Minho, Braga, Portugal.
C Cunha
A J Almeida
N S Osório
M Saraiva
M Teixeira-Coelho
S Pedreiro
E Torrado
N Domingues
A G Gomes-Alves
A Marques
J F Lacerda
M G da Silva
M Gomes
A C Pinto
F Torres
P Rendeiro
P Tavares
M Di Ianni
R Medeiros
P Heutink
P M Bracci
L Conde
P Ludovico
J Pedrosa
P Maciel
L Pitzurra
F Aversa
H Marques
A Paiva
C F Skibola
L Romani
A G Castro
F Rodrigues
University of Minho · PTUniversity of Perugia · ITInstituto Português de Oncologia Francisco Gentil · PTCentro de Genética Clínica · PTHospital de São Marcos · PTUniversity of California, Berkeley · USAmsterdam UMC Location VUmc · NLHospital de Santa Maria · PTUniversity of California, San Francisco · US

Funding

A Genome-Wide Association Study of Non-Hodgkin LymphomaR01CA122663 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SKIBOLA, CHRISTINE F. · 2006 to 2010
$2.7M
Genetic Susceptibility to Non-Hodgkins LymphomaR01CA104682 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SKIBOLA, CHRISTINE F. · 2003 to 2012
$2.6M
EPIDEMIOLOGY OF NON HODGKINS'S LYMPHOMA DATA ANALYSISR03CA089745 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI HOLLY, ELIZABETH A. · 2001 to 2002
$148k
EPIDEMIOLOGY OF NON-HODGKIN'S LYMPHOMA &RETROVIRAL TESTR01CA045614 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI HOLLY, ELIZABETH A. · 1988 to 1992
–
NCI NIH HHS CA104682NCI NIH HHS CA122663NCI NIH HHS CA89745NCI NIH HHS R01 CA045614NCI NIH HHS R01 CA104682NCI NIH HHS R01 CA122663NCI NIH HHS R03 CA089745
6 · The paper itself

Abstract

Non-Hodgkin lymphoma (NHL) has been associated with immunological defects, chronic inflammatory and autoimmune conditions. Given the link between immune dysfunction and NHL, genetic variants in toll-like receptors (TLRs) have been regarded as potential predictive factors of susceptibility to NHL. Adequate anti-tumoral responses are known to depend on TLR9 function, such that the use of its synthetic ligand is being targeted as a therapeutic strategy. We investigated the association between the functional rs5743836 polymorphism in the TLR9 promoter and risk for B-cell NHL and its major subtypes in three independent case-control association studies from Portugal (1160 controls, 797 patients), Italy (468 controls, 494 patients) and the US (972 controls, 868 patients). We found that the rs5743836 polymorphism was significantly overtransmitted in both Portuguese (odds ratio (OR), 1.85; P=7.3E-9) and Italian (OR, 1.84; P=6.0E-5) and not in the US cohort of NHL patients. Moreover, the increased transcriptional activity of TLR9 in mononuclear cells from patients harboring rs5743836 further supports a functional effect of this polymorphism on NHL susceptibility in a population-dependent manner.

Indexed as

Polymorphism, GeneticFemaleGenetics, PopulationHumansLymphoma, Non-HodgkinMaleMiddle AgedRisk FactorsToll-Like Receptor 9TLR9 protein, humanToll-Like Receptor 9

Identifiers

PMID21866115
PMCPMC3876733
OpenAlexW2093063925

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.