Evidence map›Paper›PMID 21865728›Full record

ArticleCellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology2011

Comparative evaluation of different cell lysis and extraction methods for studying benzo(a)pyrene metabolism in HT-29 colon cancer cell cultures.

Jeremy N Myers, Perumalla V Rekhadevi, Aramandla Ramesh

Erratum issuedOpen access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Extraction of active, contaminant degrading enzymes from soil.Applied soil ecology : a section of Agriculture, Ecosystems & Environment · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
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  9. Article
  10. Tumor microsomal metabolism of the food toxicant, benzo(a)pyrene, in ApcMin mouse model of colon cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2012
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jeremy N MyersDepartment of Biochemistry & Cancer Biology, Meharry Medical College, Nashville, USA.
Perumalla V Rekhadevi
Aramandla Ramesh
Meharry Medical College · US

Funding

Technologies and Resources CoreU54MD007593 · NIMHD · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2012 to 2018
$24.7M
THE MEHARRY RISE INITIATIVER25GM059994 · NIGMS · MEHARRY MEDICAL COLLEGE · PI MOTLEY-JOHNSON, EVANGELINE D · 1999 to 2021
$23.0M
RESEARCH PROJECT: "Mechanisms of B(a)P Induced Neurotoxicity"S11ES014156 · NIEHS · MEHARRY MEDICAL COLLEGE · PI HOOD, DARRYL BRICE · 2006 to 2010
$3.8M
Minority Institution Research Training ProgramT32HL007735 · NHLBI · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 1992 to 2014
$2.9M
Mechanisms for Benzo(a)pyrene-Induced Colon Cancer Exacerbation by Dietary FatR01CA142845 · NCI · MEHARRY MEDICAL COLLEGE · PI RAMESH, ARAMANDLA · 2010 to 2013
$1.2M
NCI NIH HHS 1R01CA142845-01A1NCI NIH HHS R01 CA142845NHLBI NIH HHS T32 HL007735NHLBI NIH HHS T32HL007735-12NIEHS NIH HHS 5 S11ES014156 02NIEHS NIH HHS S11 ES014156NIGMS NIH HHS 5R25GM059994NIGMS NIH HHS R25 GM059994NIMHD NIH HHS U54 MD007593
6 · The paper itself

Abstract

Lysis and extraction of cells are essential sample processing steps for investigations pertaining to metabolism of xenobiotics in cell culture studies. Of particular importance to these procedures are maintaining high lysis efficiency and analyte integrity as they influence the qualitative and quantitative distribution of drug and toxicant metabolites in the intra- and extracellular milieus. In this study we have compared the efficiency of different procedures viz. homogenization, sonication, bead beating, and molecular grinding resin treatment for disruption of HT-29 colon cells exposed to benzo(a)pyrene (BaP), a polycyclic aromatic hydrocarbon (PAH) compound and a suspected colon carcinogen. Also, we have evaluated the efficiency of various procedures for extracting BaP parent compound/metabolites from colon cells and culture media prior to High Performance Liquid Chromatography (HPLC) analyses. The extraction procedures include solid phase extraction, solid-supported liquid- liquid extraction, liquid-liquid extraction, and homogeneous liquid- liquid extraction. Our findings showed that bead-beating in combination with detergent treatment of cell pellet coupled with liquid-liquid extraction yielded greater concentrations of BaP metabolites compared to the other methods employed. Our method optimization strategy revealed that disruption of HT-29 colon cells by a combination of mechanical and chemical lysis followed by liquid-liquid extraction is efficient and robust enough for analyzing BaP metabolites from cell culture studies.

Indexed as

Chromatography, High Pressure LiquidCytological TechniquesBenzo(a)pyreneCell Line, TumorChemical FractionationColonic NeoplasmsDetergentsFreeze DryingHumansSolid Phase ExtractionSonicationBenzo(a)pyreneDetergents

Identifiers

PMID21865728
PMCPMC3709193
OpenAlexW1990745494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.