Evidence map›Paper›PMID 21865398›Full record

ArticleJournal of virology2011

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus.

Chengjun Li, Armand Bankhead, Amie J Eisfeld, Yasuko Hatta, Sophia Jeng, Jean H Chang, Lauri D Aicher, Sean Proll, Amy L Ellis, G Lynn Law and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 90 citations in OpenAlex.

  1. Pooled it
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  12. Cytokine storms, evolution and COVID-19.Evolution, medicine, and public health · 2021
    Review
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Chengjun LiUniversity of Wisconsin-Madison, School of Veterinary Medicine, Department of Pathobiological Sciences, Influenza Research Institute, 575 Science Drive, Madison, WI 53711, USA.
Armand Bankhead
Amie J Eisfeld
Yasuko Hatta
Sophia Jeng
Jean H Chang
Lauri D Aicher
Sean Proll
Amy L Ellis
G Lynn Law
Katrina M Waters
Gabriele Neumann
Michael G Katze
Shannon McWeeney
Yoshihiro Kawaoka
University of Washington · USUniversity of Wisconsin–Madison · USOregon Health & Science University · USNational Institute of Infectious Diseases · JPOregon Clinic · USPacific Northwest National Laboratory · US

Funding

OREGON CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024140 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI ORWOLL, ERIC S. · 2006 to 2011
$61.1M
NCRR NIH HHS UL1 RR024140NIAID NIH HHS HHSN272200800060C
6 · The paper itself

Abstract

During the last decade, more than half of humans infected with highly pathogenic avian influenza (HPAI) H5N1 viruses have died, yet virus-induced host signaling has yet to be clearly elucidated. Airway epithelia are known to produce inflammatory mediators that contribute to HPAI H5N1-mediated pathogenicity, but a comprehensive analysis of the host response in this cell type is lacking. Here, we leveraged a system approach to identify and statistically validate signaling subnetworks that define the dynamic transcriptional response of human bronchial epithelial cells after infection with influenza A/Vietnam/1203/2004 (H5N1, VN1203). Importantly, we validated a subset of transcripts from one subnetwork in both Calu-3 cells and mice. A more detailed examination of two subnetworks involved in the immune response and keratinization processes revealed potential novel mediators of HPAI H5N1 pathogenesis and host response signaling. Finally, we show how these results compare to those for a less virulent strain of influenza virus. Using emergent network properties, we provide fresh insight into the host response to HPAI H5N1 virus infection and identify novel avenues for perturbation studies and potential therapeutic interventions for fatal HPAI H5N1 disease.

Indexed as

Gene Expression RegulationSignal TransductionStress, PhysiologicalAnimalsCell LineEpithelial CellsGene Expression ProfilingHumansInfluenza A Virus, H5N1 SubtypeMiceRespiratory Mucosa

Identifiers

PMID21865398
PMCPMC3194976
OpenAlexW2146469651

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.