Evidence map›Paper›PMID 21865176›Full record

ArticleJournal of experimental botany2011

Molecular analysis of T-DNA insertion mutants identified putative regulatory elements in the AtTERT gene.

Miloslava Fojtová, Vratislav Peška, Zuzana Dobšáková, Iva Mozgová, Jiří Fajkus, Eva Sýkorová

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Telomerase Interaction Partners-Insight from Plants.International journal of molecular sciences · 2021
    Article
  2. Article
  3. Telomerase RNAs in land plants.Nucleic acids research · 2019
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Homology-dependent repair is involved in 45S rDNA loss in plant CAF-1 mutants.The Plant journal : for cell and molecular biology · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Three TERT genes in Nicotiana tabacum.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Miloslava FojtováInstitute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, CZ-61265 Brno, Czech Republic.
Vratislav Peška
Zuzana Dobšáková
Iva Mozgová
Jiří Fajkus
Eva Sýkorová
Central European Institute of Technology – Masaryk University · CZCzech Academy of Sciences · CZCentral European Institute of Technology · CZCzech Academy of Sciences, Institute of Biophysics · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of plants bearing a T-DNA insertion is a potent tool of modern molecular biology, providing valuable information about the function and involvement of genes in metabolic pathways. A collection of 12 Arabidopsis thaliana lines with T-DNA insertions in the gene coding for the catalytic subunit of telomerase (AtTERT) and in adjacent regions was screened for telomerase activity [telomere repeat amplification protocol (TRAP) assay], telomere length (terminal restriction fragments), and AtTERT transcription (quantitative reverse transcription-PCR). Lines with the insertion located upstream of the start codon displayed unchanged telomere stability and telomerase activity, defining a putative minimal AtTERT promoter and the presence of a regulatory element linked to increased transcription in the line SALK_048471. Lines bearing a T-DNA insertion inside the protein-coding region showed telomere shortening and lack of telomerase activity. Transcription in most of these lines was unchanged upstream of the T-DNA insertion, while it was notably decreased downstream. The expression profile varied markedly in mutant lines harbouring insertions at the 5' end of AtTERT which showed increased transcription and abolished tissue specificity. Moreover, the line FLAG_385G01 (T-DNA insertion inside intron 1) revealed the presence of a highly abundant downstream transcript with normal splicing but without active telomerase. The role of regulatory elements found along the AtTERT gene is discussed in respect to natural telomerase expression and putative intron-mediated enhancement.

Indexed as

ArabidopsisArabidopsis ProteinsDNA, BacterialGene Expression Regulation, PlantGenotypeMutagenesis, InsertionalRegulatory Sequences, Nucleic AcidReverse Transcriptase Polymerase Chain ReactionTelomeraseArabidopsis ProteinsDNA, BacterialT-DNATelomeraseTERT protein, Arabidopsis

Identifiers

PMID21865176
PMCPMC3223050
OpenAlexW2100024497

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.