Evidence map›Paper›PMID 21864351›Full record

ArticleBMC genomics2011

Drosophila selenophosphate synthetase 1 regulates vitamin B6 metabolism: prediction and confirmation.

Kwang Hee Lee, Myoung Sup Shim, Jin Young Kim, Hee Kyoung Jung, Eunji Lee, Bradley A Carlson, Xue-Ming Xu, Jin Mo Park, Dolph L Hatfield, Taesung Park and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. SEPHS1: Its evolution, function and roles in development and diseases.Archives of biochemistry and biophysics · 2022
    Article
  2. Article
  3. Review
  4. Primary cilia and the reciprocal activation of AKT and SMAD2/3 regulate stretch-induced autophagy in trabecular meshwork cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Kwang Hee LeeDepartment of Biological Sciences, Seoul National University, Seoul 151-742, Korea.
Myoung Sup Shim
Jin Young Kim
Hee Kyoung Jung
Eunji Lee
Bradley A Carlson
Xue-Ming Xu
Jin Mo Park
Dolph L Hatfield
Taesung Park
Byeong Jae Lee
Seoul National University · KRCenter for Cancer Research · USHarvard University · USNational Cancer Institute · USNational Institutes of Health · US

Funding

Biosynthesis of Selenocysteine and Its Incorporation into ProteinZIABC010767 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HATFIELD, DOLPH · 2009 to 2014
$2.0M
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundThere are two selenophosphate synthetases (SPSs) in higher eukaryotes, SPS1 and SPS2. Of these two isotypes, only SPS2 catalyzes selenophosphate synthesis. Although SPS1 does not contain selenophosphate synthesis activity, it was found to be essential for cell growth and embryogenesis in Drosophila. The function of SPS1, however, has not been elucidated.

resultsDifferentially expressed genes in Drosophila SL2 cells were identified using two-way analysis of variance methods and clustered according to their temporal expression pattern. Gene ontology analysis was performed against differentially expressed genes and gene ontology terms related to vitamin B6 biosynthesis were found to be significantly affected at the early stage at which megamitochondria were not formed (day 3) after SPS1 knockdown. Interestingly, genes related to defense and amino acid metabolism were affected at a later stage (day 5) following knockdown. Levels of pyridoxal phosphate, an active form of vitamin B6, were decreased by SPS1 knockdown. Treatment of SL2 cells with an inhibitor of pyridoxal phosphate synthesis resulted in both a similar pattern of expression as that found by SPS1 knockdown and the formation of megamitochondria, the major phenotypic change observed by SPS1 knockdown.

conclusionsThese results indicate that SPS1 regulates vitamin B6 synthesis, which in turn impacts various cellular systems such as amino acid metabolism, defense and other important metabolic activities.

Indexed as

AnimalsCells, CulturedDrosophilaDrosophila ProteinsPhosphotransferasesPyridoxal PhosphateRNA InterferenceRNA, Small InterferingVitamin B 6Drosophila ProteinsPhosphotransferasesPyridoxal PhosphateRNA, Small Interferingsps1 protein, DrosophilaVitamin B 6

Identifiers

PMID21864351
PMCPMC3218224
OpenAlexW2045055079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.