Evidence map›Paper›PMID 21863786›Full record

ArticleBiochemistry2011

Crystallographic trapping of heme loss intermediates during the nitrite-induced degradation of human hemoglobin.

Jun Yi, Leonard M Thomas, Faik N Musayev, Martin K Safo, George B Richter-Addo

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jun YiDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, United States. yijun@ou.edu
Leonard M Thomas
Faik N Musayev
Martin K Safo
George B Richter-Addo
University of Oklahoma · USVirginia Commonwealth University · US

Funding

Reactions of N-Nitroso Compounds with HemeR01GM064476 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI RICHTER-ADDO, GEORGE BANNERMAN · 2002 to 2007
$1.2M
Nitrogen Oxides and HemeR56GM064476 · NIGMS · UNIVERSITY OF OKLAHOMA · PI RICHTER-ADDO, GEORGE BANNERMAN · 2007 to 2007
$213k
NIGMS NIH HHS GM 064476NIGMS NIH HHS R01 GM064476NIGMS NIH HHS R56 GM064476
6 · The paper itself

Abstract

Heme is an important cofactor in a large number of essential proteins and is often involved in small molecule binding and activation. Loss of heme from proteins thus negatively affects the function of these proteins but is also an important component of iron recycling. The characterization of intermediates that form during the loss of heme from proteins has been problematic, in a large part, because of the instability of such intermediates. We have characterized, by X-ray crystallography, three compounds that form during the nitrite-induced degradation of human α(2)β(2) hemoglobin (Hb). The first is an unprecedented complex that exhibits a large β heme displacement of 4.8 Å toward the protein exterior; the heme displacement is stabilized by the binding of the distal His residue to the heme Fe, which in turn allows for the unusual binding of an exogenous ligand on the proximal face of the heme. We have also structurally characterized complexes that display regiospecific nitration of the heme at the 2-vinyl position; we show that heme nitration is not a prerequisite for heme loss. Our results provide structural insight into a possible pathway for nitrite-induced loss of heme from human Hb.

Indexed as

Crystallography, X-RayHemeHemoglobinsHistidineHumansModels, MolecularNitritesHemeHemoglobinsHistidineNitrites

Identifiers

PMID21863786
PMCPMC3209482
OpenAlexW2036038732

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.