Evidence map›Paper›PMID 21862839›Full record

ArticleJournal of physics. Condensed matter : an Institute of Physics journal2011

Model of myosin node aggregation into a contractile ring: the effect of local alignment.

Nikola Ojkic, Jian-Qiu Wu, Dimitrios Vavylonis

Abstract read
In one paragraph

Article in Journal of physics. Condensed matter : an Institute of Physics journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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  16. INSIGHTS INTO THE MECHANICS OF CYTOKINETIC RING ASSEMBLY USING 3D MODELING.International Mechanical Engineering Congress and Exposition : [proceedings]. International Mechanical Engineering Congress and Exposition
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Nikola OjkicDepartment of Physics, Lehigh University, Bethlehem, PA 18015, USA.
Jian-Qiu Wu
Dimitrios Vavylonis
Lehigh University · USThe Ohio State University · US

Funding

Molecular Mechanism of the Contractile-Ring Assembly in Fission Yeast CytokinesisR01GM086546 · NIGMS · OHIO STATE UNIVERSITY · PI WU, JIAN-QIU · 2009 to 2013
$1.4M
Computational Analysis and Modeling of Contractile Ring AssemblyR21GM083928 · NIGMS · LEHIGH UNIVERSITY · PI HUANG, SHARON XIAOLEI, VAVYLONIS, DIMITRIOS · 2008 to 2009
$386k
NIGMS NIH HHS R01 GM086546NIGMS NIH HHS R01GM086546NIGMS NIH HHS R21 GM083928NIGMS NIH HHS R21GM083928
6 · The paper itself

Abstract

Actomyosin bundles frequently form through aggregation of membrane-bound myosin clusters. One such example is the formation of the contractile ring in fission yeast from a broad band of cortical nodes. Nodes are macromolecular complexes containing several dozens of myosin-II molecules and a few formin dimers. The condensation of a broad band of nodes into the contractile ring has been previously described by a search, capture, pull and release (SCPR) model. In SCPR, a random search process mediated by actin filaments nucleated by formins leads to transient actomyosin connections among nodes that pull one another into a ring. The SCPR model reproduces the transport of nodes over long distances and predicts observed clump-formation instabilities in mutants. However, the model does not generate transient linear elements and meshwork structures as observed in some wild-type and mutant cells during ring assembly. As a minimal model of node alignment, we added short-range aligning forces to the SCPR model representing currently unresolved mechanisms that may involve structural components, cross-linking and bundling proteins. We studied the effect of the local node alignment mechanism on ring formation numerically. We varied the new parameters and found viable rings for a realistic range of values. Morphologically, transient structures that form during ring assembly resemble those observed in experiments with wild-type and cdc25-22 cells. Our work supports a hierarchical process of ring self-organization involving components drawn together from distant parts of the cell followed by progressive stabilization.

Indexed as

ActomyosinCytokinesisCytoskeletonModels, BiologicalMolecular Dynamics SimulationMutationMyosinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsActomyosinMyosinsSchizosaccharomyces pombe Proteins

Identifiers

PMID21862839
PMCPMC3180958
OpenAlexW2131429362

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.