Evidence map›Paper›PMID 21861899›Full record

ArticleBMC plant biology2011

A single amino acid change within the R2 domain of the VvMYB5b transcription factor modulates affinity for protein partners and target promoters selectivity.

Imène Hichri, Laurent Deluc, François Barrieu, Jochen Bogs, Ali Mahjoub, Farid Regad, Bernard Gallois, Thierry Granier, Claudine Trossat-Magnin, Eric Gomès and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

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  13. Skin Color in Apple Fruit (Epigenomes · 2020
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  16. Evolution and Diversification ofFrontiers in plant science · 2019
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  17. Article
  18. The R2R3-MYB Factor FhMYB5 FromFrontiers in plant science · 2018
    Article
  19. Article
  20. Regulation of Fig (Frontiers in plant science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Imène HichriUniv, de Bordeaux, Institut des Sciences de la Vigne et du Vin, UMR 1287 Ecophysiologie et Génomique Fonctionnelle de la Vigne, 210 Chemin de Leysotte, 33882 Villenave d'Ornon, France.
Laurent Deluc
François Barrieu
Jochen Bogs
Ali Mahjoub
Farid Regad
Bernard Gallois
Thierry Granier
Claudine Trossat-Magnin
Eric Gomès
Virginie Lauvergeat
Institut National Polytechnique de Toulouse · FRCentre National de la Recherche Scientifique · FREcophysiologie et Génomique Fonctionnelle de la Vigne · FRDienstleistungszentrum Ländlicher Raum · DEOregon State University · USUniversité Fédérale de Toulouse Midi-Pyrénées · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFlavonoid pathway is spatially and temporally controlled during plant development and the transcriptional regulation of the structural genes is mostly orchestrated by a ternary protein complex that involves three classes of transcription factors (R2-R3-MYB, bHLH and WDR). In grapevine (Vitis vinifera L.), several MYB transcription factors have been identified but the interactions with their putative bHLH partners to regulate specific branches of the flavonoid pathway are still poorly understood.

resultsIn this work, we describe the effects of a single amino acid substitution (R69L) located in the R2 domain of VvMYB5b and predicted to affect the formation of a salt bridge within the protein. The activity of the mutated protein (name VvMYB5b(L), the native protein being referred as VvMYB5b(R)) was assessed in different in vivo systems: yeast, grape cell suspensions, and tobacco. In the first two systems, VvMYB5b(L) exhibited a modified trans-activation capability. Moreover, using yeast two-hybrid assay, we demonstrated that modification of VvMYB5b transcriptional properties impaired its ability to correctly interact with VvMYC1, a grape bHLH protein. These results were further substantiated by overexpression of VvMYB5b(R) and VvMYB5b(L) genes in tobacco. Flowers from 35S::VvMYB5b(L) transgenic plants showed a distinct phenotype in comparison with 35S::VvMYB5b(R) and the control plants. Finally, significant differences in transcript abundance of flavonoid metabolism genes were observed along with variations in pigments accumulation.

conclusionsTaken together, our findings indicate that VvMYB5b(L) is still able to bind DNA but the structural consequences linked to the mutation affect the capacity of the protein to activate the transcription of some flavonoid genes by modifying the interaction with its co-partner(s). In addition, this study underlines the importance of an internal salt bridge for protein conformation and thus for the establishment of protein-protein interactions between MYB and bHLH transcription factors. Mechanisms underlying these interactions are discussed and a model is proposed to explain the transcriptional activity of VvMYB5(L) observed in the tobacco model.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBasic Helix-Loop-Helix ProteinsFlavonoidsGene Expression Regulation, PlantGenes, mybModels, MolecularMolecular Sequence DataNicotianaPhenotypePlant ProteinsPlants, Genetically ModifiedProtein Structure, TertiaryRNA, PlantTranscription FactorsTwo-Hybrid System TechniquesBasic Helix-Loop-Helix ProteinsFlavonoidsPlant ProteinsRNA, PlantTranscription Factors

Identifiers

PMID21861899
PMCPMC3240579
OpenAlexW2077214903

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.