Evidence map›Paper›PMID 21859806›Full record

ArticleGenome biology and evolution2011

Evolution of the Max and Mlx networks in animals.

Lisa G McFerrin, William R Atchley

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. MYC: there is more to it than cancer.Frontiers in cell and developmental biology · 2024
    Review
  6. Article
  7. Article
  8. Yamanaka Factors in the Budding TunicateFrontiers in cell and developmental biology · 2022
    Article
  9. Review
  10. AMPK-Mediated Regulation of Alpha-Arrestins and Protein Trafficking.International journal of molecular sciences · 2019
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Review
  17. Article
  18. Hepatic glucose sensing and integrative pathways in the liver.Cellular and molecular life sciences : CMLS · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lisa G McFerrinBioinformatics Research Center, North Carolina State University, USA. lisa.mcferrin@gmail.com
William R Atchley
North Carolina State University · US

Funding

Evolutionary inferences from protein-coding genesR01GM070806 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI STONE, ERIC A, THORNE, JEFFREY L. · 2005 to 2013
$1.7M
NIGMS NIH HHS R01 GM070806NIGMS NIH HHS R01GM070806
6 · The paper itself

Abstract

Transcription factors (TFs) are essential for the regulation of gene expression and often form emergent complexes to perform vital roles in cellular processes. In this paper, we focus on the parallel Max and Mlx networks of TFs because of their critical involvement in cell cycle regulation, proliferation, growth, metabolism, and apoptosis. A basic-helix-loop-helix-zipper (bHLHZ) domain mediates the competitive protein dimerization and DNA binding among Max and Mlx network members to form a complex system of cell regulation. To understand the importance of these network interactions, we identified the bHLHZ domain of Max and Mlx network proteins across the animal kingdom and carried out several multivariate statistical analyses. The presence and conservation of Max and Mlx network proteins in animal lineages stemming from the divergence of Metazoa indicate that these networks have ancient and essential functions. Phylogenetic analysis of the bHLHZ domain identified clear relationships among protein families with distinct points of radiation and divergence. Multivariate discriminant analysis further isolated specific amino acid changes within the bHLHZ domain that classify proteins, families, and network configurations. These analyses on Max and Mlx network members provide a model for characterizing the evolution of TFs involved in essential networks.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsBinding SitesGene Expression RegulationGene Regulatory NetworksHumansMolecular Sequence DataMultigene FamilyPhylogenyProtein Structure, TertiarySequence Homology, Amino AcidSyntenyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic-Leucine Zipper Transcription FactorsMLX protein, humanMyc associated factor X

Identifiers

PMID21859806
PMCPMC3177325
OpenAlexW2126960637

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.