Evidence map›Paper›PMID 21858085›Full record

ArticlePloS one2011

The initiation of GTP hydrolysis by the G-domain of FeoB: insights from a transition-state complex structure.

Miriam-Rose Ash, Megan J Maher, J Mitchell Guss, Mika Jormakka

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. The structure of the full catalytic cycle ofbioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Iron Homeostasis inBiology · 2023
    Review
  4. Review
  5. Review
  6. Structural basis of elongation factor 2 switching.Current research in structural biology · 2020
    Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Miriam-Rose AshSchool of Molecular Bioscience, University of Sydney, New South Wales, Australia.
Megan J Maher
J Mitchell Guss
Mika Jormakka
Centenary Institute · AUUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polytopic membrane protein FeoB is a ferrous iron transporter in prokaryotes. The protein contains a potassium-activated GTPase domain that is essential in regulating the import of iron and conferring virulence to many disease-causing bacteria. However, the mechanism by which the G-domain of FeoB hydrolyzes GTP is not well understood. In particular, it is not yet known how the pivotal step in GTP hydrolysis is achieved: alignment of a catalytic water molecule. In the current study, the crystal structure of the soluble domains from Streptococcus thermophilus FeoB (NFeoB(St)) in complex with the activating potassium ion and a transition-state analogue, GDP⋅AlF(4) (-), reveals a novel mode of water alignment involving contacts with the protein backbone only. In parallel to the structural studies, a series of seven mutant proteins were constructed that targeted conserved residues at the active site of NFeoB(St), and the nucleotide binding and hydrolysis properties of these were measured and compared to the wild-type protein. The results show that mutations in Thr35 abolish GTPase activity of the protein, while other conserved residues (Tyr58, Ser64, Glu66 and Glu67) are not required for water alignment by NFeoB(St). Together with the crystal structure, the findings suggest a new mechanism for hydrolysis initiation in small G-proteins, in which the attacking water molecule is aligned by contacts with the protein backbone only.

Indexed as

Protein ConformationProtein Structure, TertiaryAluminum CompoundsAmino Acid SequenceBacterial ProteinsBinding SitesBiocatalysisCation Transport ProteinsCrystallography, X-RayFluoridesGTP PhosphohydrolasesGuanosine DiphosphateGuanosine TriphosphateHydrolysisModels, MolecularMolecular Sequence DataAluminum CompoundsBacterial ProteinsCation Transport ProteinsFluoridesGTP PhosphohydrolasesGuanosine DiphosphateGuanosine TriphosphatePotassiumtetrafluoroaluminateThreonineWater

Identifiers

PMID21858085
PMCPMC3153494
OpenAlexW1992341090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.