Evidence map›Paper›PMID 21856301›Full record

ArticleFEBS letters2011

Characterization of benzoxaborole-based antifungal resistance mutations demonstrates that editing depends on electrostatic stabilization of the leucyl-tRNA synthetase editing cap.

Jaya Sarkar, Weimin Mao, Tommie L Lincecum, M R K Alley, Susan A Martinis

Abstract read
In one paragraph

Article in FEBS letters, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Selectivity of the Time-DependentACS chemical biology · 2025
    Article
  2. Article
  3. Article
  4. Antimicrobial agents and chemotherapy · 2021
    Article
  5. Review
  6. Exploiting evolutionary trade-offs for posttreatment management of drug-resistant populations.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Review
  8. Article
  9. tRNAs as antibiotic targets.International journal of molecular sciences · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jaya SarkarDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Weimin Mao
Tommie L Lincecum
M R K Alley
Susan A Martinis

Funding

tRNA Synthetase Fidelity MechanismsR01GM063789 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MARTINIS, SUSAN A · 2001 to 2014
$3.3M
NIGMS NIH HHS GM063789NIGMS NIH HHS R01 GM063789
6 · The paper itself

Abstract

The broad-spectrum benzoxaborole antifungal AN2690 blocks protein synthesis by inhibiting leucyl-tRNA synthetase (LeuRS) via a novel oxaborole tRNA trapping mechanism in the editing site. Herein, one set of resistance mutations is at Asp487 outside the LeuRS hydrolytic editing pocket, in a region of unknown function. It is located within a eukaryote/archaea specific insert I4, which forms part of a cap over a benzoxaborole-AMP that is bound in the LeuRS CP1 domain editing active site. Mutational and biochemical analysis at Asp487 identified a salt bridge between Asp487 and Arg316 in the hinge region of the I4 cap of yeast LeuRS that is critical for tRNA deacylation. We hypothesize that this electrostatic interaction stabilizes the cap during binding of the editing substrate for hydrolysis.

Indexed as

MutationRNA EditingAmino Acid SequenceAntifungal AgentsBoron CompoundsBridged Bicyclo Compounds, HeterocyclicDNA Mutational AnalysisDrug Resistance, FungalLeucine-tRNA LigaseMolecular Sequence DataMolecular StructureMutagenesis, Site-DirectedProtein Structure, TertiaryRNA CapsSaccharomyces cerevisiaeSequence AlignmentAntifungal AgentsBoron CompoundsBridged Bicyclo Compounds, HeterocyclicLeucine-tRNA LigaseRNA Capstavaborole

Identifiers

PMID21856301
PMCPMC3225056

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.