Evidence map›Paper›PMID 21853533›Full record

ArticleWiley interdisciplinary reviews. RNA

7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription.

B Matija Peterlin, John E Brogie, David H Price

Abstract read
In one paragraph

Article in Wiley interdisciplinary reviews. RNA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 183 citations in OpenAlex.

  1. The dark genome in cardiovascular medicine.European heart journal · 2026
    Review
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  3. Article
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  5. Review
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  9. Article
  10. Review
  11. Identification of RNA structures and their roles in RNA functions.Nature reviews. Molecular cell biology · 2024
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. NMolecular cell · 2023
    Article
  20. Article

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

B Matija PeterlinDepartment of Medicine, Rosalind Russel Medical Research Center, University of California, San Francisco, CA, USA. matija.peterlin@ucsf.edu
John E Brogie
David H Price
University of Iowa · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
FACTORS INVOLVED IN TRANSCRIPTION BY RNA POLYMERSASE IIR01GM035500 · NIGMS · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 1985 to 2017
$6.5M
TAT TransactivationR01AI049104 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETERLIN, BORIS MATIJA · 2001 to 2015
$5.3M
Regulation of P-TEFb during HIV InfectionR01AI054340 · NIAID · UNIVERSITY OF IOWA · PI PRICE, DAVID H. · 2002 to 2005
$1.2M
Analysis of interactions of HIV Tat and TAR with HEXIM1, 7SK, and P-TEFbR33AI074392 · NIAID · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 2009 to 2011
$1.1M
Analysis of interactions of HIV Tat and TAR with HEXIM1, 7SK, and P-TEFbR21AI074392 · NIAID · UNIVERSITY OF IOWA · PI PRICE, DAVID H · 2007 to 2008
$419k
NIAID NIH HHS AI049104NIAID NIH HHS AI074392NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI049104NIAID NIH HHS R01 AI054340NIAID NIH HHS R21 AI074392NIAID NIH HHS R33 AI074392NIGMS NIH HHS GM082250NIGMS NIH HHS GM35500NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R01 GM035500
6 · The paper itself

Abstract

The human 7SK small nuclear RNA (snRNA) is an abundant noncoding RNA whose function has been conserved in evolution from invertebrates to humans. It is transcribed by RNA polymerase III (RNAPIII) and is located in the nucleus. Together with associated cellular proteins, 7SK snRNA regulates the activity of the positive transcription elongation factor b (P-TEFb). In humans, this regulation is accomplished by the recruitment of P-TEFb by the 7SK snRNA-binding proteins, hexamethylene bisacetamide (HMBA)-induced mRNA 1/2 (HEXIM1 or HEXIM2), which inhibit the kinase activity of P-TEFb. P-TEFb regulates the transition of promoter proximally paused RNA polymerase II (RNAPII) into productive elongation, thereby, allowing efficient mRNA production. The protein composition of the 7SK small nuclear ribonucleoprotein (snRNP) is regulated dynamically. While the Lupus antigen (La)-related protein 7 (LARP7) is a constitutive component, the methylphosphate capping enzyme (MePCE) associates secondarily to phosphorylate the 5' end of 7SK snRNA. The release of active P-TEFb is closely followed by release of HEXIM proteins and both are replaced by heterogeneous nuclear ribonucleoproteins (hnRNPs). The released P-TEFb activates the expression of most cellular and viral genes. Regulated release of P-TEFb determines the expression pattern of many of the genes that respond to environmental stimuli and regulate growth, proliferation, and differentiation of cells.

Indexed as

Transcription, GeneticEukaryotaHumansNucleotide MotifsPositive Transcriptional Elongation Factor BRNA, Small NuclearRNA, UntranslatedPositive Transcriptional Elongation Factor BRNA, Small NuclearRNA, Untranslated

Identifiers

PMID21853533
PMCPMC3223291
OpenAlexW2165888235

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.