Evidence map›Paper›PMID 21853018›Full record

ArticlePloS one2011

A molecular assay for sensitive detection of pathogen-specific T-cells.

Victoria O Kasprowicz, Jessica E Mitchell, Shivan Chetty, Pamla Govender, Kuan-Hsiang Gary Huang, Helen A Fletcher, Daniel P Webster, Sebastian Brown, Anne Kasmar, Kerry Millington and 8 more

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Victoria O KasprowiczRagon Institute of MGH, MIT and Harvard, Harvard Medical School, Boston, Massachusetts, United States of America. vkasprowicz@partners.org
Jessica E Mitchell
Shivan Chetty
Pamla Govender
Kuan-Hsiang Gary Huang
Helen A Fletcher
Daniel P Webster
Sebastian Brown
Anne Kasmar
Kerry Millington
Cheryl L Day
Nompumelelo Mkhwanazi
Cheryl McClurg
Fundisiwe Chonco
Ajit Lalvani
Bruce D Walker
Thumbi Ndung'u
Paul Klenerman

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG, GEORG Michael LAUER · 2009 to 2026
$48.1M
Mycolate-specific T cell function in human immunity to Mycobacterium tuberculosisK08AI089858 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KASMAR, ANNE · 2010 to 2014
$686k
Howard Hughes Medical InstituteMedical Research CouncilNIAID NIH HHS 1U19AI082630-01NIAID NIH HHS K08 AI089858NIAID NIH HHS P30 AI060354NIAID NIH HHS U19 AI082630Wellcome Trust 091663
6 · The paper itself

Abstract

Here we describe the development and validation of a highly sensitive assay of antigen-specific IFN-γ production using real time quantitative PCR (qPCR) for two reporters--monokine-induced by IFN-γ (MIG) and the IFN-γ inducible protein-10 (IP10). We developed and validated the assay and applied it to the detection of CMV, HIV and Mycobacterium tuberculosis (MTB) specific responses, in a cohort of HIV co-infected patients. We compared the sensitivity of this assay to that of the ex vivo RD1 (ESAT-6 and CFP-10)-specific IFN-γ Elispot assay. We observed a clear quantitative correlation between the two assays (P<0.001). Our assay proved to be a sensitive assay for the detection of MTB-specific T cells, could be performed on whole blood samples of fingerprick (50 uL) volumes, and was not affected by HIV-mediated immunosuppression. This assay platform is potentially of utility in diagnosis of infection in this and other clinical settings.

Indexed as

Chemokine CXCL9Enzyme-Linked Immunospot AssayEpitopesGene Expression RegulationHIVHIV InfectionsHumansImmunoassayImmunosuppression TherapyInterferon-gammaLeukocytes, MononuclearMycobacterium tuberculosisReal-Time Polymerase Chain ReactionReceptors, CytokineReproducibility of ResultsSensitivity and SpecificityChemokine CXCL9CXCL9 protein, humanEpitopesInterferon-gammaIP10-Mig receptorReceptors, Cytokine

Identifiers

PMID21853018
PMCPMC3154901

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.