Evidence map›Paper›PMID 21849664›Full record

ArticleScience translational medicine2011

Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease.

Joel T Dudley, Marina Sirota, Mohan Shenoy, Reetesh K Pai, Silke Roedder, Annie P Chiang, Alex A Morgan, Minnie M Sarwal, Pankaj Jay Pasricha, Atul J Butte

Abstract read
In one paragraph

Article in Science translational medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 330 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
330citing papers in PubMed, 4 pooled it
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

330 citing papers in PubMed, 4 syntheses or guidelines pooled it, 615 citations in OpenAlex.

  1. Pooled it
  2. Guideline
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  13. Targeting the intestinal TLR4-GABAJournal of neuroinflammation · 2026
    Article
  14. TheInternational journal of molecular sciences · 2025
    Review
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270 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Joel T DudleyDivision of Systems Medicine, Department of Pediatrics, Stanford University School of Medicine, 251 Campus Drive, Stanford, CA 94305-5415, USA.
Marina Sirota
Mohan Shenoy
Reetesh K Pai
Silke Roedder
Annie P Chiang
Alex A Morgan
Minnie M Sarwal
Pankaj Jay Pasricha
Atul J Butte
Lucile Packard Children's Hospital · USStanford University · US

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Repositioning drugs for the treatment of small cell lung cancerR01GM079719 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUTTE, ATUL J · 2006 to 2015
$4.4M
Comparative functional genomics for lung cancer gene discoveryR01CA138256 · NCI · STANFORD UNIVERSITY · PI BUTTE, ATUL J, SAGE, JULIEN · 2008 to 2012
$2.8M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA138256NIGMS NIH HHS R01 GM079719NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) is a chronic inflammatory disorder of the gastrointestinal tract for which there are few safe and effective therapeutic options for long-term treatment and disease maintenance. Here, we applied a computational approach to discover new drug therapies for IBD in silico, using publicly available molecular data reporting gene expression in IBD samples and 164 small-molecule drug compounds. Among the top compounds predicted to be therapeutic for IBD by our approach were prednisolone, a corticosteroid used to treat IBD, and topiramate, an anticonvulsant drug not previously described to have efficacy for IBD or any related disorders of inflammation or the gastrointestinal tract. Using a trinitrobenzenesulfonic acid (TNBS)-induced rodent model of IBD, we experimentally validated our topiramate prediction in vivo. Oral administration of topiramate significantly reduced gross pathological signs and microscopic damage in primary affected colon tissue in the TNBS-induced rodent model of IBD. These findings suggest that topiramate might serve as a therapeutic option for IBD in humans and support the use of public molecular data and computational approaches to discover new therapeutic options for disease.

Indexed as

AnticonvulsantsComputational BiologyFructoseHumansInflammatory Bowel DiseasesReverse Transcriptase Polymerase Chain ReactionTopiramateAnticonvulsantsFructoseTopiramate

Identifiers

PMID21849664
PMCPMC3479650
OpenAlexW2128054164

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.