Evidence map›Paper›PMID 21849498›Full record

ArticleThe Journal of biological chemistry2011

Mammalian testis-determining factor SRY and the enigma of inherited human sex reversal: frustrated induced fit in a bent protein-DNA complex.

Nelson B Phillips, Joseph Racca, Yen-Shan Chen, Rupinder Singh, Agnes Jancso-Radek, James T Radek, Nalinda P Wickramasinghe, Elisha Haas, Michael A Weiss

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  8. Article
  9. Inherited human sex reversal due to impaired nucleocytoplasmic trafficking of SRY defines a male transcriptional threshold.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  10. Microsatellite-encoded domain in rodent Sry functions as a genetic capacitor to enable the rapid evolution of biological novelty.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. SRY protein function in sex determination: thinking outside the box.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Nelson B PhillipsDepartment of Biochemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Joseph Racca
Yen-Shan Chen
Rupinder Singh
Agnes Jancso-Radek
James T Radek
Nalinda P Wickramasinghe
Elisha Haas
Michael A Weiss
Case Western Reserve University · USBar-Ilan University · IL

Funding

RESEARCH ONCOLOGY TRAINING GRANTT32CA059366 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI JACKSON, MARK W. · 1993 to 2025
$5.5M
Biochemical Studies of a Transcription FactorR01GM080505 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI WEISS, MICHAEL AARON · 2008 to 2011
$1.4M
NCI NIH HHS T32 CA059366NIGMS NIH HHS GM080505NIGMS NIH HHS R01 GM080505
6 · The paper itself

Abstract

Mammalian testis-determining factor SRY contains a high mobility group box, a conserved eukaryotic motif of DNA bending. Mutations in SRY cause XY gonadal dysgenesis and somatic sex reversal. Although such mutations usually arise de novo in spermatogenesis, some are inherited and so specify male development in one genetic background (the father) but not another (the daughter). Here, we describe the biophysical properties of a representative inherited mutation, V60L, within the minor wing of the L-shaped domain (box position 5). Although the stability and DNA binding properties of the mutant domain are similar to those of wild type, studies of SRY-induced DNA bending by subnanosecond time-resolved fluorescence resonance energy transfer (FRET) revealed enhanced conformational fluctuations leading to long range variation in bend angle. (1)H NMR studies of the variant protein-DNA complex demonstrated only local perturbations near the mutation site. Because the minor wing of SRY folds on DNA binding, the inherited mutation presumably hinders induced fit. Stopped-flow FRET studies indicated that such frustrated packing leads to accelerated dissociation of the bent complex. Studies of SRY-directed transcriptional regulation in an embryonic gonadal cell line demonstrated partial activation of downstream target Sox9. Our results have demonstrated a nonlocal coupling between DNA-directed protein folding and protein-directed DNA bending. Perturbation of this coupling is associated with a genetic switch poised at the threshold of activity.

Indexed as

Amino Acid SubstitutionGonadal Dysgenesis, 46,XYMutation, MissenseNucleic Acid ConformationProtein FoldingAnimalsCell LineDNAHumansMagnetic Resonance SpectroscopyMaleProtein Structure, TertiaryRodentiaSex-Determining Region Y ProteinSOX9 Transcription FactorStructure-Activity RelationshipDNASex-Determining Region Y ProteinSOX9 protein, humanSOX9 Transcription FactorSRY protein, human

Identifiers

PMID21849498
PMCPMC3196072
OpenAlexW2014066444

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.