Evidence map›Paper›PMID 21846785›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Wendy W Chapman, Prakash M Nadkarni, Lynette Hirschman, Leonard W D'Avolio, Guergana K Savova, Ozlem Uzuner

Abstract readEditorialComment
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Wendy W Chapman
Prakash M Nadkarni
Lynette Hirschman
Leonard W D'Avolio
Guergana K Savova
Ozlem Uzuner

Funding

Informatics for Integrating Biology/ the Bedside (RMI)U54LM008748 · NLM · BRIGHAM AND WOMEN'S HOSPITAL · PI KOHANE, ISAAC S. · 2004 to 2013
$39.0M
iDASH: Integrating Data for Analysis, Anonymization, and SharingU54HL108460 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2010 to 2015
$19.1M
UC Davis Clinical and Translational Science CenterUL1TR000002 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERGLUND, LARS F · 2012 to 2015
$12.2M
Annotation, development and evaluation for clinical information extraction (transfer)R01GM090187 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHAPMAN, WENDY W., ELHADAD, NOEMIE · 2010 to 2013
$2.6M
The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology DeR01CA127979 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JACOBSON, REBECCA S · 2007 to 2010
$2.1M
NCATS NIH HHS 90TR0002NCATS NIH HHS UL1 TR000002NCI NIH HHS R01 CA127979NHLBI NIH HHS U54 HL108460NHLBI NIH HHS U54HL108460NIGMS NIH HHS R01 GM090187NIGMS NIH HHS R01GM090187NLM NIH HHS U54 LM008748NLM NIH HHS U54LM008748
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Data MiningDecision Support Systems, ClinicalElectronic Health RecordsNatural Language ProcessingHumans

Identifiers

PMID21846785
PMCPMC3168329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.