Evidence map›Paper›PMID 21844369›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Remarkable patterns of surface water ordering around polarized buckminsterfullerene.

Gaurav Chopra, Michael Levitt

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Gaurav ChopraDepartment of Structural Biology, Stanford University School of Medicine, D100 Fairchild Building, Stanford, CA 94305, USA. gaurav.chopra@stanford.edu
Michael Levitt

Funding

Simulation and Prediction of Protein FoldingR37GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2002 to 2012
$2.8M
SIMULATION OF PROTEIN UNFOLDING AND FOLDINGR01GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 1989 to 2001
$361k
NIGMS NIH HHS GM041455NIGMS NIH HHS R01 GM041455NIGMS NIH HHS R37 GM041455
6 · The paper itself

Abstract

Accurate description of water structure affects simulation of protein folding, substrate binding, macromolecular recognition, and complex formation. We study the hydration of buckminsterfullerene, the smallest hydrophobic nanosphere, by molecular dynamics simulations using a state-of-the-art quantum mechanical polarizable force field (QMPFF3), derived from quantum mechanical data at the MP2/aug-cc-pVTZ(-hp) level augmented by CCSD(T). QMPFF3 calculation of the hydrophobic effect is compared to that obtained with empirical force fields. Using a novel and highly sensitive method, we see polarization increases ordered water structure so that the imprint of the hydrophobic surface atoms on the surrounding waters is stronger and extends to long-range. We see less water order for empirical force fields. The greater order seen with QMPFF3 will affect biological processes through a stronger hydrophobic effect.

Indexed as

FullerenesHydrophobic and Hydrophilic InteractionsModels, MolecularStatic ElectricityWaterFullerenesWater

Identifiers

PMID21844369
PMCPMC3167499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.