Evidence map›Paper›PMID 21844336›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1.

Sookhee Park, Erin E Patterson, Jenel Cobb, Anjon Audhya, Marc R Gartenberg, Catherine A Fox

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. The Many Faces of Lipids in Genome Stability (and How to Unmask Them).International journal of molecular sciences · 2021
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Compartmentalized DNA repair: Rif1Molecular & cellular oncology · 2019
    Article
  17. Review
  18. Article
  19. Review
  20. Effect of dietary palmitic and stearic acids on sucrose motivation and hypothalamic and striatal cell signals in the rat.American journal of physiology. Regulatory, integrative and comparative physiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sookhee ParkDepartment of Biomolecular Chemistry and Laboratory of Genetics, School of Medicine and Public Health and College of Agricultural and Life Sciences, University of Wisconsin, Madison, WI 53706, USA.
Erin E Patterson
Jenel Cobb
Anjon Audhya
Marc R Gartenberg
Catherine A Fox
University of Wisconsin–Madison · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
Cohesin in Chromosome Architecture and Transcriptional ControlR01GM051402 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI GARTENBERG, MARC R. · 1995 to 2022
$7.9M
Origin Recognition Complex at Transcriptional SilencersR01GM056890 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, CATHERINE A · 1998 to 2020
$6.4M
Molecular Mechanisms that Regulate Lysosomal Protein TransportR01GM088151 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 2010 to 2019
$3.0M
MARC Predoctoral Fellowship ProgramF31GM078746 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI NIXON, JENEL · 2006 to 2009
$92k
CHROMOSOME ARCHITECTURER55GM051402 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI GARTENBERG, MARC R. · 1994 to 1994
–
NIGMS NIH HHS 5 T32 GM07133NIGMS NIH HHS F31 GM078746NIGMS NIH HHS GM078746NIGMS NIH HHS GM51402NIGMS NIH HHS GM56890NIGMS NIH HHS R01 GM051402NIGMS NIH HHS R01 GM056890NIGMS NIH HHS R01 GM088151NIGMS NIH HHS R01 GM56890NIGMS NIH HHS T32 GM007133
6 · The paper itself

Abstract

The posttranslational addition of palmitate to cysteines occurs ubiquitously in eukaryotic cells, where it functions in anchoring target proteins to membranes and in vesicular trafficking. Here we show that the Saccharomyces cerevisiae palmitoyltransferase Pfa4 enhanced heterochromatin formation at the cryptic mating-type loci HMR and HML via Rif1, a telomere regulatory protein. Acylated Rif1 was detected in extracts from wild-type but not pfa4Δ mutant cells. In a pfa4Δ mutant, Rif1-GFP dispersed away from foci positioned at the nuclear periphery into the nucleoplasm. Sir3-GFP distribution was also perturbed, indicating a change in the nuclear dynamics of heterochromatin proteins. Genetic analyses indicated that PFA4 functioned upstream of RIF1. Surprisingly, the pfa4Δ mutation had only mild effects on telomeric regulation, suggesting Rif1's roles at HM loci and telomeres were more complexly related than previously thought. These data supported a model in which Pfa4-dependent palmitoylation of Rif1 anchored it to the inner nuclear membrane, influencing its role in heterochromatin dynamics.

Indexed as

AcylationAcyltransferasesHeterochromatinLipoylationRepressor ProteinsSaccharomyces cerevisiae ProteinsSaccharomycetalesSilent Information Regulator Proteins, Saccharomyces cerevisiaeTelomereTelomere-Binding ProteinsAcyltransferasesHeterochromatinPfa4 protein, S cerevisiaeRepressor ProteinsRIF1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR3 protein, S cerevisiaeTelomere-Binding Proteins

Identifiers

PMID21844336
PMCPMC3167557
OpenAlexW2111698240

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.