Evidence map›Paper›PMID 21844303›Full record

ArticleThe Journal of infectious diseases2011

Limited immunogenicity of HIV CD8+ T-cell epitopes in acute Clade C virus infection.

Mopo Radebe, Kriebashnie Nair, Fundisiwe Chonco, Karen Bishop, Jaclyn K Wright, Mary van der Stok, Ingrid V Bassett, Zenele Mncube, Marcus Altfeld, Bruce D Walker and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Mopo RadebeHIV Pathogenesis Programme, Doris Duke Medical Research Institute, Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Kriebashnie Nair
Fundisiwe Chonco
Karen Bishop
Jaclyn K Wright
Mary van der Stok
Ingrid V Bassett
Zenele Mncube
Marcus Altfeld
Bruce D Walker
Thumbi Ndung'u
University of KwaZulu-Natal · ZARagon Institute of MGH, MIT and Harvard · USMassachusetts General Hospital · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Daniel Lingwood · 2004 to 2026
$94.4M
Pathogenesis of Clade C HIV InfectionR37AI067073 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, BRUCE D · 2011 to 2020
$6.6M
Pathogenesis of Clade C HIV InfectionR01AI067073 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, BRUCE D · 2006 to 2010
$2.9M
Linkage & Retention: A Randomized Trial to Optimize HIV/TB Care in South AfricaR01MH090326 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI BASSETT, INGRID VALERIE · 2010 to 2014
$2.9M
The Efficacy and Impact of Routine HIV and TB Testing in Durban, South AfricaK23AI068458 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BASSETT, INGRID VALERIE · 2006 to 2010
$669k
NIAID NIH HHS K23 AI 068458NIAID NIH HHS K23 AI068458NIAID NIH HHS P30 AI060354NIAID NIH HHS R01-AI067073NIAID NIH HHS R37 AI067073NIMH NIH HHS R01 MH090326
6 · The paper itself

Abstract

backgroundHuman immunodeficiency virus type 1 (HIV-1)-specific CD8(+) responses contribute to the decline in acute peak viremia following infection. However, data on the relative immunogenicity of CD8(+) T-cell epitopes during and after acute viremia are lacking.

methodsWe characterized CD8(+) T-cell responses in 20 acutely infected, antiretroviral-naive individuals with HIV-1 subtype C infection using the interferon-γ enzyme-linked immunosorbent spot assay. Eleven of these had not fully seroconverted at the time of analysis. Viruses from plasma were sequenced within defined cytotoxic T-lymphocyte (CTL) cell epitopes for selected subjects.

resultsAt approximately 28 days after estimated initial infection, CD8(+) T-cell responses were directed against an average of 3 of the 410 peptides tested (range, 0-6); 2 individuals had no detectable responses at this time. At 18 weeks, the average number of peptides targeted had increased to 5 (range 0-11). Of the 56 optimal Gag CTL epitopes sequenced, 31 were wild-type in the infecting viruses, but only 11 of 31 elicited measurable CD8(+) T-cell responses.

conclusionsThese data demonstrate that the majority of CD8(+) responses are not elicited during acute HIV infection despite the presence of the cognate epitope in the infecting strain. There is a need to define factors that influence lack of induction of effective immune responses and the parameters that dictate immunodominance in acute infection.

Indexed as

Acute DiseaseCD8-Positive T-LymphocytesEnzyme-Linked Immunospot AssayEpitopes, T-LymphocyteGene Products, gagGene Products, nefHIV-1HIV InfectionsHIV SeropositivityHumansInterferon-gammaRNA, ViralTime FactorsViral LoadEpitopes, T-LymphocyteGene Products, gagGene Products, nefInterferon-gammaRNA, Viral

Identifiers

PMID21844303
PMCPMC3156105
OpenAlexW2099296320

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.