Evidence map›Paper›PMID 21841781›Full record

ArticleNature genetics2011

A copy number variation morbidity map of developmental delay.

Gregory M Cooper, Bradley P Coe, Santhosh Girirajan, Jill A Rosenfeld, Tiffany H Vu, Carl Baker, Charles Williams, Heather Stalker, Rizwan Hamid, Vickie Hannig and 16 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 735 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
735citing papers in PubMed, 3 pooled it
82.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

735 citing papers in PubMed, 3 syntheses or guidelines pooled it, 1,390 citations in OpenAlex.

  1. Pooled it
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  16. Rare 19q13.42 duplication encompassingTranslational pediatrics · 2026
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675 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

26 authors at 15 institutions in 1 country.

Gregory M CooperDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Bradley P Coe
Santhosh Girirajan
Jill A Rosenfeld
Tiffany H Vu
Carl Baker
Charles Williams
Heather Stalker
Rizwan Hamid
Vickie Hannig
Hoda Abdel-Hamid
Patricia Bader
Elizabeth McCracken
Dmitriy Niyazov
Kathleen Leppig
Heidi Thiese
Marybeth Hummel
Nora Alexander
Jerome Gorski
Jennifer Kussmann
Vandana Shashi
Krys Johnson
Catherine Rehder
Blake C Ballif
Lisa G Shaffer
Evan E Eichler
Signature Research (United States) · USUniversity of Washington · USDuke Medical Center · USGroup Health Cooperative · USSeattle University · USUniversity of Florida · USUniversity of Missouri · USVanderbilt University Medical Center · USWest Virginia University · USChildren's Hospital of Pittsburgh · USCounseling Center · USDuke University Health System · USHudsonAlpha Institute for Biotechnology · USOchsner Medical Center · USUniversity of Pittsburgh · US

Funding

Genomic Identification of Autism LociR01HD065285 · NICHD · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2009 to 2010
$2.6M
Role of BMPR2 expression in HPAH; implications for novel therapeutic approachesR01HL102020 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAMID, RIZWAN · 2011 to 2015
$2.3M
CIHRHoward Hughes Medical InstituteNHLBI NIH HHS R01 HL102020NICHD NIH HHS HD065285NICHD NIH HHS R01 HD065285Wellcome TrustWellcome Trust 076113Wellcome Trust 085475
6 · The paper itself

Abstract

To understand the genetic heterogeneity underlying developmental delay, we compared copy number variants (CNVs) in 15,767 children with intellectual disability and various congenital defects (cases) to CNVs in 8,329 unaffected adult controls. We estimate that ∼14.2% of disease in these children is caused by CNVs >400 kb. We observed a greater enrichment of CNVs in individuals with craniofacial anomalies and cardiovascular defects compared to those with epilepsy or autism. We identified 59 pathogenic CNVs, including 14 new or previously weakly supported candidates, refined the critical interval for several genomic disorders, such as the 17q21.31 microdeletion syndrome, and identified 940 candidate dosage-sensitive genes. We also developed methods to opportunistically discover small, disruptive CNVs within the large and growing diagnostic array datasets. This evolving CNV morbidity map, combined with exome and genome sequencing, will be critical for deciphering the genetic basis of developmental delay, intellectual disability and autism spectrum disorders.

Indexed as

Chromosome MappingGene DosageGenetic VariationAdultChild, PreschoolCongenital AbnormalitiesDevelopmental DisabilitiesHumans

Identifiers

PMID21841781
PMCPMC3171215
OpenAlexW2106650442

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.