Evidence map›Paper›PMID 21841088›Full record

ArticlePlant physiology2011

Defining the protein complex proteome of plant mitochondria.

Jennifer Klodmann, Michael Senkler, Christina Rode, Hans-Peter Braun

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 170 citations in OpenAlex.

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  10. International journal of molecular sciences · 2022
    Article
  11. Article
  12. High-Throughput BN-PAGE for Mitochondrial Respiratory Complexes.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
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  15. Review
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  18. Review
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  20. Conserved and Opposite Transcriptome Patterns during Germination inInternational journal of molecular sciences · 2020
    Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jennifer KlodmannInstitute for Plant Genetics, Faculty of Natural Sciences, Leibniz Universität Hannover, D-30419 Hannover, Germany.
Michael Senkler
Christina Rode
Hans-Peter Braun
Leibniz University Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A classical approach, protein separation by two-dimensional blue native/sodium dodecyl sulfate-polyacrylamide gel electrophoresis, was combined with tandem mass spectrometry and up-to-date computer technology to characterize the mitochondrial "protein complex proteome" of Arabidopsis (Arabidopsis thaliana) in so far unrivaled depth. We further developed the novel GelMap software package to annotate and evaluate two-dimensional blue native/sodium dodecyl sulfate gels. The software allows (1) annotation of proteins according to functional and structural correlations (e.g. subunits of a distinct protein complex), (2) assignment of comprehensive protein identification lists to individual gel spots, and thereby (3) selective display of protein complexes of low abundance. In total, 471 distinct proteins were identified by mass spectrometry, several of which form part of at least 35 different mitochondrial protein complexes. To our knowledge, numerous protein complexes were described for the first time (e.g. complexes including pentatricopeptide repeat proteins involved in nucleic acid metabolism). Discovery of further protein complexes within our data set is open to everybody via the public GelMap portal at www.gelmap.de/arabidopsis_mito.

Indexed as

Adenosine TriphosphatasesArabidopsis ProteinsCarrier ProteinsCitric Acid CycleCytochromes cElectron Transport Complex IIIElectron Transport Complex IVElectrophoresis, Gel, Two-DimensionalElectrophoresis, Polyacrylamide GelMass SpectrometryMembrane ProteinsMitochondrial ProteinsMitochondrial Proton-Translocating ATPasesProteomeSoftwareSuccinate DehydrogenaseAdenosine TriphosphatasesArabidopsis ProteinsCarrier ProteinsCytochromes cElectron Transport Complex IIIElectron Transport Complex IVMembrane ProteinsMitochondrial ProteinsMitochondrial Proton-Translocating ATPasesoligomycin sensitivity-conferring proteinpentatricopeptide repeat protein, ArabidopsisProteomeSuccinate Dehydrogenase

Identifiers

PMID21841088
PMCPMC3192552
OpenAlexW2006546995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.