Evidence map›Paper›PMID 21840419›Full record

ArticleBiochimica et biophysica acta2012

Influence of C-terminal α-helix hydrophobicity and aromatic amino acid content on apolipoprotein A-I functionality.

Nicholas N Lyssenko, Mami Hata, Padmaja Dhanasekaran, Margaret Nickel, David Nguyen, Palaniappan Sevugan Chetty, Hiroyuki Saito, Sissel Lund-Katz, Michael C Phillips

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Is ABCA1 a lipid transfer protein?Journal of lipid research · 2018
    Review
  3. Article
  4. Article
  5. Article
  6. ApoA1 and ApoA1-specific self-antibodies in cardiovascular disease.Laboratory investigation; a journal of technical methods and pathology · 2016
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Molecular mechanisms of cellular cholesterol efflux.The Journal of biological chemistry · 2014
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Genetics of cholesterol efflux.Current atherosclerosis reports · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Nicholas N LyssenkoLipid Research Group, Gastroenterology, Hepatology and Nutrition Division, Children's Hospital of Philadelphia, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-4318, USA.
Mami Hata
Padmaja Dhanasekaran
Margaret Nickel
David Nguyen
Palaniappan Sevugan Chetty
Hiroyuki Saito
Sissel Lund-Katz
Michael C Phillips
Philadelphia University · USTokushima University · JPUniversity of Pennsylvania · US

Funding

TISSUE CULTURE CORE LABORATORYP01HL022633 · NHLBI · MCP HAHNEMANN UNIVERSITY · PI DE LA LLERA-MOYA, MARGARITA E · 1985 to 2013
$26.1M
ABCA1-mediated biogenesis of nascent HDL particlesF32HL107065 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI LYSSENKO, NICHOLAS · 2011 to 2013
$171k
NHLBI NIH HHS F32 HL107065NHLBI NIH HHS HL22633NHLBI NIH HHS P01 HL022633
6 · The paper itself

Abstract

The apoA-I molecule adopts a two-domain tertiary structure and the properties of these domains modulate the ability to form HDL particles. Thus, human apoA-I differs from mouse apoA-I in that it can form smaller HDL particles; the C-terminal α-helix is important in this process and human apoA-I is unusual in containing aromatic amino acids in the non-polar face of this amphipathic α-helix. To understand the influence of these aromatic amino acids and the associated high hydrophobicity, apoA-I variants were engineered in which aliphatic amino acids were substituted with or without causing a decrease in overall hydrophobicity. The variants human apoA-I (F225L/F229A/Y236A) and apoA-I (F225L/F229L/A232L/Y236L) were compared to wild-type (WT) apoA-I for their abilities to (1) solubilize phospholipid vesicles and form HDL particles of different sizes, and (2) mediate cellular cholesterol efflux and create nascent HDL particles via ABCA1. The loss of aromatic residues and concomitant decrease in hydrophobicity in apoA-I (F225L/F229A/Y236A) has no effect on protein stability, but reduces by a factor of about three the catalytic efficiencies (V(max)/K(m)) of vesicle solubilization and cholesterol efflux; also, relatively large HDL particles are formed. With apoA-I (F225L/F229L/A232L/Y236L) where the hydrophobicity is restored by the presence of only leucine residues in the helix non-polar face, the catalytic efficiencies of vesicle solubilization and cholesterol efflux are similar to those of WT apoA-I; this variant forms smaller HDL particles. Overall, the results show that the hydrophobicity of the non-polar face of the C-terminal amphipathic α-helix plays a critical role in determining apoA-I functionality but aromatic amino acids are not required. This article is part of a Special Issue entitled Advances in High Density Lipoprotein Formation and Metabolism: A Tribute to John F. Oram (1945-2010).

Indexed as

Amino Acids, AromaticAmino Acid SubstitutionAnimalsApolipoprotein A-IATP Binding Cassette Transporter 1ATP-Binding Cassette TransportersCells, CulturedCholesterolCricetinaeHumansHydrophobic and Hydrophilic InteractionsLipoproteins, HDLMutagenesis, Site-DirectedProtein DenaturationProtein StabilityProtein Structure, SecondaryABCA1 protein, humanAmino Acids, AromaticAPOA1 protein, humanApolipoprotein A-IATP Binding Cassette Transporter 1ATP-Binding Cassette TransportersCholesterolLipoproteins, HDL

Identifiers

PMID21840419
PMCPMC3227795
OpenAlexW2007021068

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.