Evidence map›Paper›PMID 21838895›Full record

ArticleBMC genomics2011

Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level.

Audrey Ot Lau, Ananth Kalyanaraman, Ignacio Echaide, Guy H Palmer, Russell Bock, Monica J Pedroni, Meenakshi Rameshkumar, Mariano B Ferreira, Taryn I Fletcher, Terry F McElwain

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. HarnessingVaccines · 2022
    Review
  3. Article
  4. A Culture-Adapted Strain ofFrontiers in cellular and infection microbiology · 2022
    Article
  5. Review
  6. An Overview of Current Knowledge onFrontiers in veterinary science · 2020
    Review
  7. Article
  8. Interplay between Attenuation- and Virulence-Factors ofPathogens (Basel, Switzerland) · 2019
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. EuPathDB: the eukaryotic pathogen database.Nucleic acids research · 2013
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Audrey Ot LauPrograms in Genomics and Vector-borne Diseases, Department of Veterinary Microbiology & Pathology and Paul G, Allen School for Global Animal Health, College of Veterinary Medicine, Washington State University, Pullman, USA. laua@vetmed.wsu.edu
Ananth Kalyanaraman
Ignacio Echaide
Guy H Palmer
Russell Bock
Monica J Pedroni
Meenakshi Rameshkumar
Mariano B Ferreira
Taryn I Fletcher
Terry F McElwain
Washington State University · USImperial College London · GB

Funding

Wellcome Trust GRO075800M
6 · The paper itself

Abstract

backgroundVirulence acquisition and loss is a dynamic adaptation of pathogens to thrive in changing milieus. We investigated the mechanisms of virulence loss at the whole genome level using Babesia bovis as a model apicomplexan in which genetically related attenuated parasites can be reliably derived from virulent parental strains in the natural host. We expected virulence loss to be accompanied by consistent changes at the gene level, and that such changes would be shared among attenuated parasites of diverse geographic and genetic background.

resultsSurprisingly, while single nucleotide polymorphisms in 14 genes distinguished all attenuated parasites from their virulent parental strains, all non-synonymous changes resulted in no deleterious amino acid modification that could consistently be associated with attenuation (or virulence) in this hemoparasite. Interestingly, however, attenuation significantly reduced the overall population's genome diversity with 81% of base pairs shared among attenuated strains, compared to only 60% of base pairs common among virulent parental parasites. There were significantly fewer genes that were unique to their geographical origins among the attenuated parasites, resulting in a simplified population structure among the attenuated strains.

conclusionsThis simplified structure includes reduced diversity of the variant erythrocyte surface 1 (ves) multigene family repertoire among attenuated parasites when compared to virulent parental strains, possibly suggesting that overall variance in large protein families such as Variant Erythrocyte Surface Antigens has a critical role in expression of the virulence phenotype. In addition, the results suggest that virulence (or attenuation) mechanisms may not be shared among all populations of parasites at the gene level, but instead may reflect expansion or contraction of the population structure in response to shifting milieus.

Indexed as

GenomicsAnimalsBabesia bovisBloodGenetic VariationGeographyPhenotypeSequence AnalysisSpecies Specificity

Identifiers

PMID21838895
PMCPMC3166950
OpenAlexW1996028801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.