Evidence map›Paper›PMID 21838295›Full record

ArticleJournal of proteome research2011

Proteomic analysis of an immortalized mouse pancreatic stellate cell line identifies differentially-expressed proteins in activated vs nonproliferating cell states.

Joao A Paulo, Raul Urrutia, Peter A Banks, Darwin L Conwell, Hanno Steen

Abstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 36 citations in OpenAlex.

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  16. Insulin promotes proliferation and fibrosing responses in activated pancreatic stellate cells.American journal of physiology. Gastrointestinal and liver physiology · 2016
    Article
  17. Article
  18. Article
  19. Primary outgrowth cultures are a reliable source of human pancreatic stellate cells.Laboratory investigation; a journal of technical methods and pathology · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Joao A PauloCenter for Pancreatic Disease, Division of Gastroenterology, Hepatology and Endoscopy, Brigham and Women's Hospital and Department of Medicine, Harvard Medical School , Boston, Massachusettes, United States.
Raul Urrutia
Peter A Banks
Darwin L Conwell
Hanno Steen
Harvard University · USBrigham and Women's Hospital · USMayo Clinic · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI LYNN BRY · 1986 to 2026
$32.4M
ZINC FINGER GENES AND PANCREATIC CELL GROWTHR01DK052913 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI LOMBERK, GWEN, URRUTIA, RAUL A. · 1998 to 2023
$7.0M
Pancreatic Fluid Proteomics in Alcohol Induced Chronic PancreatitisR21DK081703 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI CONWELL, DARWIN LEWIS · 2010 to 2011
$483k
Proteomics of Pancreatic Fluid and Urine in Chronic PancreatitisF32DK085835 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2010 to 2012
$166k
NIDDK NIH HHS 1 F32DK085835-01A1NIDDK NIH HHS 1 R21 DK081703-01A2NIDDK NIH HHS 5P30 DK034854-24NIDDK NIH HHS F32 DK085835NIDDK NIH HHS P30 DK034854NIDDK NIH HHS R01 DK052913NIDDK NIH HHS R21 DK081703
6 · The paper itself

Abstract

Pancreatic stellate cells (PaSC) are mediators in chronic pancreatitis and pancreatic cancer pathogenesis. Proteins regulating the biomolecular pathways involved in the conversion of activated to quiescent PaSC may have a significant influence in the development of chronic pancreatitis. We aim to compare differentially expressed proteins from an immortalized cell line of mouse PaSC in the activated and serum-starved cell states using mass spectrometry-based proteomics. PaSC cultured in media supplemented with fetal bovine serum (FBS) proliferate in the activated state, while serum starvation promotes the cellular transition to a "pseudo-quiescent" state. Using these two cell states, we performed a comparative mass spectrometry (GeLC-MS/MS) proteomic analysis. We identified over 2000 nonredundant proteins in PaSC. Qualitative and label-free quantitative analysis revealed several hundred proteins that were differentially abundant between the cell states. Proteins that were more abundant in activated PaSC included cytoskeletal proteins and ribosomal proteins, while those more abundant in pseudoquiescent PaSC included proteins involved in protein degradation-related pathways (lysosome, ubiquitin-mediated proteolysis, and the proteasome). Investigation of the role of PaSC in the pathogenesis of chronic pancreatitis using the mass spectrometry-based proteomics strategy described herein will lead to further insights into the molecular mechanisms associated with the disease.

Indexed as

Gene Expression RegulationAnimalsCell LineCell ProliferationComputational BiologyCytoskeletonElectrophoresis, Polyacrylamide GelFibrosisMicePancreatic Stellate CellsPancreatitisProteomicsRibosomal ProteinsSubcellular FractionsTandem Mass SpectrometryRibosomal Proteins

Identifiers

PMID21838295
PMCPMC3189387
OpenAlexW1990352230

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.