Evidence map›Paper›PMID 21835784›Full record

ArticleJournal of virology2011

Structural basis for antiviral inhibition of the main protease, 3C, from human enterovirus 93.

Lionel Costenaro, Zuzanna Kaczmarska, Carme Arnan, Robert Janowski, Bruno Coutard, Maria Solà, Alexander E Gorbalenya, Heléne Norder, Bruno Canard, Miquel Coll

Abstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Crystal structures of the 3C proteases from Coxsackievirus B3 and B4.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  7. Article
  8. Structural similarities between SARS-CoV2 3CLFrontiers in chemistry · 2022
    Article
  9. DWV InfectionFrontiers in microbiology · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Coxsackievirus B3 protease 3C: expression, purification, crystallization and preliminary structural insights.Acta crystallographica. Section F, Structural biology communications · 2016
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lionel CostenaroInstitute for Research in Biomedicine, Barcelona, Spain.
Zuzanna Kaczmarska
Carme Arnan
Robert Janowski
Bruno Coutard
Maria Solà
Alexander E Gorbalenya
Heléne Norder
Bruno Canard
Miquel Coll

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the Enterovirus genus of the Picornaviridae family are abundant, with common human pathogens that belong to the rhinovirus (HRV) and enterovirus (EV) species, including diverse echo-, coxsackie- and polioviruses. They cause a wide spectrum of clinical manifestations ranging from asymptomatic to severe diseases with neurological and/or cardiac manifestations. Pandemic outbreaks of EVs may be accompanied by meningitis and/or paralysis and can be fatal. However, no effective prophylaxis or antiviral treatment against most EVs is available. The EV RNA genome directs the synthesis of a single polyprotein that is autocatalytically processed into mature proteins at Gln↓Gly cleavage sites by the 3C protease (3C(pro)), which has narrow, conserved substrate specificity. These cleavages are essential for virus replication, making 3C(pro) an excellent target for antivirus drug development. In this study, we report the first determination of the crystal structure of 3C(pro) from an enterovirus B, EV-93, a recently identified pathogen, alone and in complex with the anti-HRV molecules compound 1 (AG7404) and rupintrivir (AG7088) at resolutions of 1.9, 1.3, and 1.5 Å, respectively. The EV-93 3C(pro) adopts a chymotrypsin-like fold with a canonically configured oxyanion hole and a substrate binding pocket similar to that of rhino-, coxsackie- and poliovirus 3C proteases. We show that compound 1 and rupintrivir are both active against EV-93 in infected cells and inhibit the proteolytic activity of EV-93 3C(pro) in vitro. These results provide a framework for further structure-guided optimization of the tested compounds to produce antiviral drugs against a broad range of EV species.

Indexed as

3C Viral ProteasesAntiviral AgentsBinding SitesCrystallography, X-RayCysteine EndopeptidasesEnterovirusEnzyme InhibitorsHumansIsoxazolesModels, MolecularPhenylalanineProtein BindingProtein Structure, TertiaryPyrrolidinonesValineViral Proteins3C Viral ProteasesAntiviral AgentsCysteine EndopeptidasesEnzyme InhibitorsIsoxazolesPhenylalaninePyrrolidinonesrupintrivirValineViral Proteins

Identifiers

PMID21835784
PMCPMC3187475

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.