Evidence map›Paper›PMID 21835266›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2012

Distinct clinical and epidemiological features of tuberculosis in New York City caused by the RD(Rio) Mycobacterium tuberculosis sublineage.

Scott A Weisenberg, Andrea L Gibson, Richard C Huard, Natalia Kurepina, Heejung Bang, Luiz C O Lazzarini, Yalin Chiu, Jiehui Li, Shama Ahuja, Jeff Driscoll and 2 more

Abstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Trial
  2. Review
  3. Frequency of the Mycobacterium tuberculosis RDBMC infectious diseases · 2019
    Article
  4. Article
  5. Review
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  7. Global expansion ofScience advances · 2018
    Article
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  16. Tuberculosis caused by RDRio Mycobacterium tuberculosis is not associated with differential clinical features.The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Scott A WeisenbergDivision of Infectious Diseases, Department of Medicine, Weill Medical College of Cornell University, New York, NY, USA.
Andrea L Gibson
Richard C Huard
Natalia Kurepina
Heejung Bang
Luiz C O Lazzarini
Yalin Chiu
Jiehui Li
Shama Ahuja
Jeff Driscoll
Barry N Kreiswirth
John L Ho
Cornell University · USNew York City Department of Health and Mental Hygiene · USAlta Bates Summit Medical Center · USCenters for Disease Control and Prevention · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024996 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2007 to 2011
$49.6M
TUBERCULOSIS INTERNATIONAL TRAINING AND RESEARCH PROGRAMD43TW000018 · FIC · WEILL MEDICAL COLL OF CORNELL UNIV · PI JOHNSON, WARREN DOUGLAS · 1988 to 2012
$16.1M
Innovative approaches for tuberculosis control in BrazilU2RTW006883 · FIC · FEDERAL UNIVERSITY OF RIO DE JANEIRO · PI LAPA E SILVA, JOSE ROBERTO · 2005 to 2015
$3.5M
Clinical and Translational Science Center (KL2)KL2RR024997 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2007 to 2011
$1.5M
Antigen Capture Assays for Rapid Tuberculosis DiagnosisR21AI062332 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI HO, JOHN LAP · 2004 to 2005
$461k
Large-scale Gene Deletion in Infectious M. tuberculosisR21AI063147 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI HO, JOHN LAP · 2005 to 2006
$390k
FIC NIH HHS 5 U2R TW006883FIC NIH HHS D43 TW000018FIC NIH HHS D43 TW00018FIC NIH HHS U2R TW006883NCRR NIH HHS KL2 RR024997NCRR NIH HHS KL2RR024997NCRR NIH HHS UL1 RR024996NIAID NIH HHS R21 AI062332NIAID NIH HHS R21 AI063147
6 · The paper itself

Abstract

backgroundGenetic tracking of Mycobacterium tuberculosis is a cornerstone of tuberculosis (TB) control programs. The RD(Rio) M. tuberculosis sublineage was previously associated with TB in Brazil. We investigated 3847 M. tuberculosis isolates and registry data from New York City (NYC) (2001-2005) to: (1) affirm the position of RD(Rio) strains within the M. tuberculosis phylogenetic structure, (2) determine its prevalence, and (3) define transmission, demographic, and clinical characteristics associated with RD(Rio) TB.

methodsIsolates classified as RD(Rio) or non-RD(Rio) M. tuberculosis by multiplex PCR were further classified as clustered (≥2 isolates) or unique based primarily upon IS6110-RFLP patterns and lineage-specific cluster proportions were calculated. The secondary case rate of RD(Rio) was compared with other prevalent M. tuberculosis lineages. Genotype data were merged with the data from the NYC TB Registry to assess demographic and clinical characteristics.

resultsRD(Rio) strains were found to: (1) be restricted to the Latin American-Mediterranean family, (2) cause approximately 8% of TB cases in NYC, and (3) be associated with heightened transmission as shown by: (i) a higher cluster proportion compared to other prevalent lineages, (ii) a higher secondary case rate, and (iii) cases in children. Furthermore, RD(Rio) strains were significantly associated with US-born Black or Hispanic race, birth in Latin American and Caribbean countries, and isoniazid resistance.

conclusionsThe RD(Rio) genotype is a single M. tuberculosis strain population that is emerging in NYC. The findings suggest that expanded RD(Rio) case and exposure identification could be of benefit due to its association with heightened transmission.

Indexed as

Cluster AnalysisFemaleGenotypeHumansMaleMolecular TypingMycobacterium tuberculosisNew York CityPhylogenyPhylogeographyPrevalenceTuberculosis

Identifiers

PMID21835266
PMCPMC3290718
OpenAlexW1966801538

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.