Evidence map›Paper›PMID 21834041›Full record

ArticleAmerican journal of medical genetics. Part A2011

Variants in genes that encode muscle contractile proteins influence risk for isolated clubfoot.

Katelyn S Weymouth, Susan H Blanton, Michael J Bamshad, Anita E Beck, Christine Alvarez, Steve Richards, Christina A Gurnett, Matthew B Dobbs, Douglas Barnes, Laura E Mitchell and 1 more

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Association of Polymorphism in Locus of rs274503 (Genetic testing and molecular biomarkers · 2024
    Article
  5. Review
  6. Review
  7. Diagnostic yield of exome sequencing in congenital vertical talus.European journal of medical genetics · 2022
    Article
  8. Review
  9. Integrated Bioinformatics Analysis Reveals Potential Pathway Biomarkers and Their Interactions for Clubfoot.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  10. Article
  11. The genetics of isolated and syndromic clubfoot.Journal of children's orthopaedics · 2019
    Article
  12. Article
  13. Article
  14. Review
  15. Heritability of clubfoot: a twin study.Journal of children's orthopaedics · 2014
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 2 countries.

Katelyn S WeymouthUniversity of Texas Medical School at Houston, Houston, Texas 77030, USA.
Susan H Blanton
Michael J Bamshad
Anita E Beck
Christine Alvarez
Steve Richards
Christina A Gurnett
Matthew B Dobbs
Douglas Barnes
Laura E Mitchell
Jacqueline T Hecht
Shriners Hospitals for Children - Houston · USThe University of Texas Health Science Center at Houston · USUniversity of Washington · USScottish Rite Hospital · USShriners Hospitals for Children · USShriners Hospitals for Children - St. Louis · USUniversity of British Columbia · CAUniversity of Miami · US

Funding

The Role of the Osteoblast Secretome in Bone FormationP30AR057235 · NIAMS · WASHINGTON UNIVERSITY · PI SILVA, MATTHEW J · 2009 to 2018
$5.7M
Genetic Studies of Clubfoot (ITEV)R01HD043342 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HECHT, JACQUELINE T · 2006 to 2010
$1.7M
NIAMS NIH HHS P30 AR057235NICHD NIH HHS R01 HD043342NICHD NIH HHS R01-HD043342-05
6 · The paper itself

Abstract

Isolated clubfoot is a relatively common birth defect that affects approximately 4,000 newborns in the US each year. Calf muscles in the affected leg(s) are underdeveloped and remain small even after corrective treatment. This observation suggests that variants in genes that influence muscle development are priority candidate risk factors for clubfoot. This contention is further supported by the discovery that mutations in genes that encode components of the muscle contractile complex (MYH3, TPM2, TNNT3, TNNI2, and MYH8) cause congenital contractures, including clubfoot, in distal arthrogryposis (DA) syndromes. Interrogation of 15 genes encoding proteins that control myofiber contractility in a cohort of both non-Hispanic White (NHW) and Hispanic families, identified positive associations (P < 0.05) with SNPs in 12 genes; only 1 was identified in a family-based validation dataset. Six SNPs in TNNC2 deviated from Hardy-Weinberg equilibrium in mothers in our NHW discovery dataset. Relative risk and likelihood ratio tests showed evidence for a maternal genotypic effect with TNNC2/rs383112 and an inherited/child genotypic effect with two SNPs, TNNC2/rs4629 and rs383112. Associations with multiple SNPs in TPM1 were identified in the NHW discovery (rs4075583, P = 0.01), family-based validation (rs1972041, P = 0.000074), and case-control validation (rs12148828, P = 0.04) datasets. Gene interactions were identified between multiple muscle contraction genes with many of the interactions involving at least one potential regulatory SNP. Collectively, our results suggest that variation in genes that encode contractile proteins of skeletal myofibers may play a role in the etiology of clubfoot.

Indexed as

Genetic VariationArthrogryposisClubfootContractile ProteinsCytoskeletal ProteinsFemaleGenotypeHumansMaleMuscle ContractionMuscle ProteinsMusculoskeletal AbnormalitiesPolymorphism, Single NucleotideContractile ProteinsCytoskeletal ProteinsMuscle Proteins

Identifiers

PMID21834041
PMCPMC3158831
OpenAlexW2066417535

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.