Evidence map›Paper›PMID 21832058›Full record

ArticleThe Journal of biological chemistry2011

Structural basis for inhibition of cathepsin B drug target from the human blood fluke, Schistosoma mansoni.

Adéla Jílková, Pavlína Řezáčová, Martin Lepšík, Martin Horn, Jana Váchová, Jindřich Fanfrlík, Jiří Brynda, James H McKerrow, Conor R Caffrey, Michael Mareš

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Catalytically Active Recombinant Cysteine Proteases ofInternational journal of molecular sciences · 2025
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. De Novo Design of Cathepsin B1 Inhibitors as Potential Anti-Schistosomal Agents Using Computational Studies.Advances and applications in bioinformatics and chemistry : AABC · 2022
    Article
  12. The Zoonotic Helminth ParasiteAnimals : an open access journal from MDPI · 2021
    Article
  13. Article
  14. A comprehensive and critical overview of schistosomiasis vaccine candidates.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Serine proteases activity in miracidia ofVeterinary research forum : an international quarterly journal · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Adéla JílkováInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic; Department of Biochemistry, Faculty of Science, Charles University, 12843 Prague, Czech Republic.
Pavlína ŘezáčováInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic; Department of Structural Biology, Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
Martin LepšíkInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
Martin HornInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
Jana VáchováInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
Jindřich FanfrlíkInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
Jiří BryndaInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic; Department of Structural Biology, Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic.
James H McKerrowSandler Center for Drug Discovery, California Institute for Quantitative Biosciences and Department of Pathology, University of California San Francisco, San Francisco, California 94158.
Conor R CaffreySandler Center for Drug Discovery, California Institute for Quantitative Biosciences and Department of Pathology, University of California San Francisco, San Francisco, California 94158.
Michael MarešInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 16610 Prague, Czech Republic. Electronic address: mares@uochb.cas.cz.
Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZQB3 · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Schistosomiasis caused by a parasitic blood fluke of the genus Schistosoma afflicts over 200 million people worldwide. Schistosoma mansoni cathepsin B1 (SmCB1) is a gut-associated peptidase that digests host blood proteins as a source of nutrients. It is under investigation as a drug target. To further this goal, we report three crystal structures of SmCB1 complexed with peptidomimetic inhibitors as follows: the epoxide CA074 at 1.3 Å resolution and the vinyl sulfones K11017 and K11777 at 1.8 and 2.5 Å resolutions, respectively. Interactions of the inhibitors with the subsites of the active-site cleft were evaluated by quantum chemical calculations. These data and inhibition profiling with a panel of vinyl sulfone derivatives identify key binding interactions and provide insight into the specificity of SmCB1 inhibition. Furthermore, hydrolysis profiling of SmCB1 using synthetic peptides and the natural substrate hemoglobin revealed that carboxydipeptidase activity predominates over endopeptidolysis, thereby demonstrating the contribution of the occluding loop that restricts access to the active-site cleft. Critically, the severity of phenotypes induced in the parasite by vinyl sulfone inhibitors correlated with enzyme inhibition, providing support that SmCB1 is a valuable drug target. The present structure and inhibitor interaction data provide a footing for the rational design of anti-schistosomal inhibitors.

Indexed as

Drug Delivery SystemsAnimalsCathepsin DCrystallography, X-RayHelminth ProteinsHemoglobinsHumansHydrolysisPeptidesPeptidomimeticsProtease InhibitorsSchistosoma mansoniSchistosomiasis mansoniStructure-Activity RelationshipCathepsin DHelminth ProteinsHemoglobinsPeptidesPeptidomimeticsProtease Inhibitors

Identifiers

PMID21832058
PMCPMC3195637
OpenAlexW2131096147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.