Evidence map›Paper›PMID 21832017›Full record

ArticleJournal of clinical microbiology2011

Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses.

Mariette F Ducatez, Zhipeng Cai, Malik Peiris, Yi Guan, Zhiping Ye, Xiu-Feng Wan, Richard J Webby

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Effect of a straw-derived xylooligosaccharide on broiler growth performance, endocrine metabolism, and immune response.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2013
    Trial
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  4. Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
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  12. AntigenMap 3D: an online antigenic cartography resource.Bioinformatics (Oxford, England) · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mariette F DucatezDepartment of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105-3678, USA.
Zhipeng Cai
Malik Peiris
Yi Guan
Zhiping Ye
Xiu-Feng Wan
Richard J Webby

Funding

Prediction of influenza antigenic variants using a novel sparse multitask learninRC1AI086830 · NIAID · MISSISSIPPI STATE UNIVERSITY · PI WAN, XIUFENG HENRY · 2010 to 2010
$413k
NIAID NIH HHS 1RC1AI086830NIAID NIH HHS HHSN266200700005CNIAID NIH HHS RC1 AI086830
6 · The paper itself

Abstract

Highly pathogenic H5N1 avian influenza viruses emerged in 1996 and have since evolved so extensively that a single strain can no longer be used as a prepandemic vaccine or diagnostic reagent. We therefore sought to identify the H5N1 strains that may best serve as cross-reactive diagnostic reagents. We compared the cross-reactivity of 27 viruses of clades 0, 1, 2.1, 2.2, 2.3, and 4 and of four computationally designed ancestral H5N1 strains by hemagglutination inhibition (HI) and microneutralization (MN) assays. Antigenic cartography was used to analyze the large quantity of resulting data. Cartographs of HI titers with chicken red blood cells were similar to those of MN titers, but HI with horse red blood cells decreased antigenic distances among the H5N1 strains studied. Thus, HI with horse red blood cells seems to be the assay of choice for H5N1 diagnostics. Whereas clade 2.2 antigens were able to detect antibodies raised to most of the tested H5N1 viruses (and clade 2.2-specific antisera detected most of the H5N1 antigens), ancestral strain A exhibited the widest reactivity pattern and hence was the best candidate diagnostic reagent for broad detection of H5N1 strains.

Indexed as

Cross ReactionsAnimalsAntibodies, ViralAntigens, ViralChickensErythrocytesHemagglutination Inhibition TestsHorsesHumansInfluenza A Virus, H5N1 SubtypeNeutralization TestsAntibodies, ViralAntigens, Viral

Identifiers

PMID21832017
PMCPMC3187336

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.