Evidence map›Paper›PMID 21831442›Full record

ArticleMolecular immunology2011

NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.

Andrea L Wurster, Patricia Precht, Michael J Pazin

Abstract read
In one paragraph

Article in Molecular immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. CD4Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Article
  5. Article
  6. Sca-1European journal of immunology · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Opposing action of nuclear factor κB and Polo-like kinases determines a homeostatic end point for excitatory synaptic adaptation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  11. Article
  12. Article
  13. Article
  14. ATP-dependent chromatin remodeling in T cells.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2012
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Andrea L WursterLaboratory of Molecular Biology and Immunology, National Institute on Aging Intramural Research Program, National Institutes of Health, USA.
Patricia Precht
Michael J Pazin
Institute on Aging · USNational Institute on Aging · US

Funding

Chromatin Remodeling and Lymphocyte RegulationZIAAG000524 · NIA · NATIONAL INSTITUTE ON AGING · PI PAZIN, MICHAEL J · 2009 to 2012
$1.4M
Chromatin Remodeling and Lymphocyte RegulationZ01AG000524 · NIA · NATIONAL INSTITUTE ON AGING · PI PAZIN, MICHAEL J · 2005 to 2008
$999k
Intramural NIH HHS Z01 AG000524Intramural NIH HHS ZIA AG000524NIA NIH HHS 1 Z01 AG000524
6 · The paper itself

Abstract

We investigated gene regulation at the IL-3/GM-CSF gene cluster. We found BRG1, a SWI/SNF remodeling ATPase, bound a distal element, CNSa. BRG1 binding was strongest in differentiated, stimulated T helper cells, paralleling IL-3 and GM-CSF expression. Depletion of BRG1 reduced IL-3 and GM-CSF transcription. BAF-specific SWI/SNF subunits bound to this locus and regulated IL-3 expression. CNSa was in closed chromatin in fibroblasts, open chromatin in differentiated T helper cells, and moderately open chromatin in naïve (undifferentiated) T helper cells; BRG1 was required for the most open state. CNSa increased transcription of a reporter in an episomal expression system, in a BRG1-dependent manner. The NF-κB subunit RelA/p65 bound CNSa in activated T helper cells. Inhibition of NF-κB blocked BRG1 binding to CNSa, chromatin opening at CNSa, and activation of IL-3 and GM-CSF. Together, these findings suggest CNSa is a distal enhancer that binds BRG1 and NF-κB.

Indexed as

AnimalsCells, CulturedChromatin ImmunoprecipitationDNA HelicasesGene ExpressionGene Expression RegulationImmunoblottingInterleukin-3MiceMice, Inbred BALB CNF-kappa BNuclear ProteinsPolymerase Chain ReactionRegulatory Elements, TranscriptionalT-Lymphocytes, Helper-InducerTranscription FactorsDNA HelicasesInterleukin-3NF-kappa BNuclear ProteinsSmarca4 protein, mouseTranscription Factors

Identifiers

PMID21831442
PMCPMC3163777
OpenAlexW1993922218

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.